Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G14
(532 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein. 220 2e-57
AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP... 220 2e-57
AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protei... 220 2e-57
AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein. 220 2e-57
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 218 1e-56
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 218 1e-56
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 218 1e-56
BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein. 217 2e-56
AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens ... 126 6e-29
U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subun... 44 4e-04
U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit o... 44 4e-04
BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein... 44 4e-04
AY623424-1|AAT49048.1| 800|Homo sapiens adaptor-related protein... 44 4e-04
U37673-1|AAC50219.1| 1081|Homo sapiens beta-NAP protein. 40 0.005
BC093739-1|AAH93739.1| 1082|Homo sapiens adaptor-related protein... 40 0.005
AF022152-1|AAB71894.1| 1082|Homo sapiens AP-3 complex beta3B sub... 40 0.005
BC037280-1|AAH37280.1| 953|Homo sapiens coatomer protein comple... 30 5.8
AY909643-1|AAY57091.1| 124|Homo sapiens immunoglobulin heavy ch... 30 5.8
AF111807-1|AAL39009.1| 953|Homo sapiens MSTP026 protein. 30 5.8
AF084457-1|AAD41240.1| 953|Homo sapiens beta-cop homolog protein. 30 5.8
>BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein.
Length = 726
Score = 220 bits (538), Expect = 2e-57
Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE SG NP+Q+L+K+ VLQE R FN+TP+NPR+C ILTK+LYLLNQGE F
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
AIRALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AIRALCRITDGTMLQAIERYMKQAIVDK 151
>AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP
protein.
Length = 871
Score = 220 bits (538), Expect = 2e-57
Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE SG NP+Q+L+K+ VLQE R FN+TP+NPR+C ILTK+LYLLNQGE F
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
AIRALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AIRALCRITDGTMLQAIERYMKQAIVDK 151
>AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protein
gamma2-COP protein.
Length = 871
Score = 220 bits (538), Expect = 2e-57
Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE SG NP+Q+L+K+ VLQE R FN+TP+NPR+C ILTK+LYLLNQGE F
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
AIRALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AIRALCRITDGTMLQAIERYMKQAIVDK 151
>AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein.
Length = 871
Score = 220 bits (538), Expect = 2e-57
Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE SG NP+Q+L+K+ VLQE R FN+TP+NPR+C ILTK+LYLLNQGE F
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
AIRALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AIRALCRITDGTMLQAIERYMKQAIVDK 151
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 218 bits (532), Expect = 1e-56
Identities = 106/148 (71%), Positives = 121/148 (81%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE G NP+Q+L+K+ VLQE R FN+TP+NPRKC+ ILTK+LYL+NQGE
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA TKLFQS D LRRM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
A+RALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AVRALCQITDSTMLQAIERYMKQAIVDK 151
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 218 bits (532), Expect = 1e-56
Identities = 106/148 (71%), Positives = 121/148 (81%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE G NP+Q+L+K+ VLQE R FN+TP+NPRKC+ ILTK+LYL+NQGE
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA TKLFQS D LRRM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
A+RALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AVRALCQITDSTMLQAIERYMKQAIVDK 151
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 218 bits (532), Expect = 1e-56
Identities = 106/148 (71%), Positives = 121/148 (81%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 KRDKKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTV 268
K DKK+EE G NP+Q+L+K+ VLQE R FN+TP+NPRKC+ ILTK+LYL+NQGE
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAA 448
EATE FFA TKLFQS D LRRM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGP 123
Query: 449 AIRALCSITEPTMLQAIERYMKQAIVDK 532
A+RALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 124 AVRALCQITDSTMLQAIERYMKQAIVDK 151
>BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein.
Length = 865
Score = 217 bits (530), Expect = 2e-56
Identities = 105/145 (72%), Positives = 122/145 (84%), Gaps = 1/145 (0%)
Frame = +2
Query: 101 KKEEEDSSG-NPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTVQEA 277
KK+EE SG NP+Q+L+K+ VLQE R FN+TP+NPR+C ILTK+LYLLNQGE F EA
Sbjct: 1 KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEA 60
Query: 278 TEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAAAIR 457
TE FFA T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR AIR
Sbjct: 61 TEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIR 120
Query: 458 ALCSITEPTMLQAIERYMKQAIVDK 532
ALC IT+ TMLQAIERYMKQAIVDK
Sbjct: 121 ALCRITDGTMLQAIERYMKQAIVDK 145
>AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ12872 fis, clone NT2RP2003760, highly similar to
COATOMER GAMMA SUBUNIT. ).
Length = 799
Score = 126 bits (303), Expect = 6e-29
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +2
Query: 299 TKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITE 478
T+LFQS D LRRM YL IKE++T+++DVIIVTSSLTKDMTGKED+YR AIRALC IT+
Sbjct: 2 TRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITD 61
Query: 479 PTMLQAIERYMKQAIVDK 532
TMLQAIERYMKQAIVDK
Sbjct: 62 GTMLQAIERYMKQAIVDK 79
>U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subunit
protein.
Length = 1093
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+E+F A K SK++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 74 KNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 133
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 134 SALRVLSSIRVPIIVPIMMLAIKEASAD 161
>U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit of
the AP-3 complex protein.
Length = 1094
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+E+F A K SK++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 74 KNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 133
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 134 SALRVLSSIRVPIIVPIMMLAIKEASAD 161
>BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein
complex 3, beta 1 subunit protein.
Length = 1094
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+E+F A K SK++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 74 KNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 133
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 134 SALRVLSSIRVPIIVPIMMLAIKEASAD 161
>AY623424-1|AAT49048.1| 800|Homo sapiens adaptor-related protein
complex 3 beta 1 subunit protein.
Length = 800
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+E+F A K SK++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 74 KNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 133
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 134 SALRVLSSIRVPIIVPIMMLAIKEASAD 161
>U37673-1|AAC50219.1| 1081|Homo sapiens beta-NAP protein.
Length = 1081
Score = 39.9 bits (89), Expect = 0.005
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+++F A K K++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 69 KNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRA 128
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 129 SALRVLSSIRVPIIVPIMMLAIKEAASD 156
>BC093739-1|AAH93739.1| 1082|Homo sapiens adaptor-related protein
complex 3, beta 2 subunit protein.
Length = 1082
Score = 39.9 bits (89), Expect = 0.005
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+++F A K K++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 69 KNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRA 128
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 129 SALRVLSSIRVPIIVPIMMLAIKEAASD 156
>AF022152-1|AAB71894.1| 1082|Homo sapiens AP-3 complex beta3B
subunit protein.
Length = 1082
Score = 39.9 bits (89), Expect = 0.005
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 QEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT-SSLTKDMTGKEDLYRA 445
+ A+++F A K K++ ++++VY+ + + QD+ +++ S+ + + L RA
Sbjct: 69 KNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRA 128
Query: 446 AAIRALCSITEPTMLQAIERYMKQAIVD 529
+A+R L SI P ++ + +K+A D
Sbjct: 129 SALRVLSSIRVPIIVPIMMLAIKEAASD 156
>BC037280-1|AAH37280.1| 953|Homo sapiens coatomer protein complex,
subunit beta 1 protein.
Length = 953
Score = 29.9 bits (64), Expect = 5.8
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 221 LTKVLYLLNQGEKFTVQEATEVFFATTKLFQSKDVMLRRMVYLCIKELST----LAQDVI 388
L KV+ ++ GEK T + F Q + +V+ I +T L ++I
Sbjct: 42 LKKVIIMILNGEKLPGLLMTIIRFVLP--LQDHTIKKLLLVFWEIVPKTTPDGRLLHEMI 99
Query: 389 IVTSSLTKDMTGKEDLYRAAAIRALCSITEPTMLQAI 499
+V + KD+ + R + +R LC + E +L+ +
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
>AY909643-1|AAY57091.1| 124|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 124
Score = 29.9 bits (64), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 279 QRYFSLLRSYFNPRM*CFDVW 341
+RY+ +L Y+ PR FD+W
Sbjct: 101 RRYYDILTGYYEPRTDAFDIW 121
>AF111807-1|AAL39009.1| 953|Homo sapiens MSTP026 protein.
Length = 953
Score = 29.9 bits (64), Expect = 5.8
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 221 LTKVLYLLNQGEKFTVQEATEVFFATTKLFQSKDVMLRRMVYLCIKELST----LAQDVI 388
L KV+ ++ GEK T + F Q + +V+ I +T L ++I
Sbjct: 42 LKKVIIMILNGEKLPGLLMTIIRFVLP--LQDHTIKKLLLVFWEIVPKTTPDGRLLHEMI 99
Query: 389 IVTSSLTKDMTGKEDLYRAAAIRALCSITEPTMLQAI 499
+V + KD+ + R + +R LC + E +L+ +
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
>AF084457-1|AAD41240.1| 953|Homo sapiens beta-cop homolog protein.
Length = 953
Score = 29.9 bits (64), Expect = 5.8
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 221 LTKVLYLLNQGEKFTVQEATEVFFATTKLFQSKDVMLRRMVYLCIKELST----LAQDVI 388
L KV+ ++ GEK T + F Q + +V+ I +T L ++I
Sbjct: 42 LKKVIIMILNGEKLPGLLMTIIRFVLP--LQDHTIKKLLLVFWEIVPKTTPDGRLLHEMI 99
Query: 389 IVTSSLTKDMTGKEDLYRAAAIRALCSITEPTMLQAI 499
+V + KD+ + R + +R LC + E +L+ +
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,622,831
Number of Sequences: 237096
Number of extensions: 1440226
Number of successful extensions: 3439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3427
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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