Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G14
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 50  FVIKSKKKLQMSSFKRDKKEEEDSSGNP 133
           +V KSK   +  + K+  KE+ED    P
Sbjct: 199 WVYKSKASEEHGNKKKKNKEDEDDGATP 226


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +2

Query: 53  VIKSKKKLQMSSFKRDKKEEEDSSGNPYQNLDKTIVLQETRYFNQTPV 196
           ++    K ++    ++KK E+   G P +N+ ++    ET    +T +
Sbjct: 491 IVYHLSKAELDKMDKEKKLEDLEMGTPLENILESCQQDETHAPEKTKI 538


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 8   EQVTCKLLSSVPNNFVIKSKKKLQMSSFKRDKKEEEDSSGNPYQN 142
           E  TCK  +   N+   +S+   + SS     ++     GN Y+N
Sbjct: 203 ETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRN 247


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 62  SKKKLQMSSFKRDKKEEEDSSGNPYQNLDK 151
           SKK+  +  +  D  EEE S+   ++  DK
Sbjct: 30  SKKQQMLGIWADDSDEEELSARPSFKTFDK 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,672
Number of Sequences: 438
Number of extensions: 3127
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)