Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G13
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568     28   3.5  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   3.5  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     27   6.2  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    27   8.2  
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743...    27   8.2  

>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
          Length = 156

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -2

Query: 272 GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMPKTLPPIPRSVD 102
           G+ L  ++ P + V+ L D ++   Y    + R  Y+SSS+ S     P+  PP P  + 
Sbjct: 13  GDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMS 71

Query: 101 SCSVGIXXXXXXXXXXXXXTLISF--DPAT 18
            C +G+              LI    DPAT
Sbjct: 72  GCVIGVRRGGTVDVSDILDILILHGPDPAT 101


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 253  LESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSA 408
            L+ KGSPRS +   P+  E   +E+Q+     D     L++ V+Q   PS A
Sbjct: 3519 LQDKGSPRSTQPPPPI--ESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 163 DVYM-CLKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVES 339
           DV++ CLKE +    ETL +  EI + DG      G   SA+     S E      + E+
Sbjct: 197 DVHLSCLKELMSHSHETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFEN 256

Query: 340 R 342
           +
Sbjct: 257 Q 257


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 167 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 84
           +S+ST S T+ +  PP PRS+ SC   I
Sbjct: 6   SSTSTPSSTIERLRPPYPRSI-SCHASI 32


>03_04_0053 +
           16873735-16873927,16874011-16874162,16874286-16874380,
           16874704-16874818,16875054-16875343,16875436-16875585,
           16876478-16876598,16876671-16876942,16877466-16877937
          Length = 619

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 193 LKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLE 372
           L   + LRS R++ L D V  + KG  +  +      D+P      +      +AA F++
Sbjct: 384 LNQVKVLRSMRQLRLEDVVVGQYKGHSKGGKTYPAYVDDPTVPSGSITPTFA-AAALFID 442

Query: 373 N 375
           N
Sbjct: 443 N 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,467
Number of Sequences: 37544
Number of extensions: 288225
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)