Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G09
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   232   1e-61
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    29   2.2  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical pr...    27   9.0  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   9.0  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  232 bits (567), Expect = 1e-61
 Identities = 109/146 (74%), Positives = 119/146 (81%)
 Frame = +1

Query: 106 SRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 285
           SRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA RIC NKY+VKN
Sbjct: 20  SRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKN 79

Query: 286 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 465
           CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R
Sbjct: 80  CGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMR 139

Query: 466 SSDRWKAQVIEALRRAKFKFPGRQKI 543
             +      IEA RRAKFKFPGRQ I
Sbjct: 140 IKEGNVKHAIEAFRRAKFKFPGRQII 165


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 413 GFPNAPRIPVWSLSAPA 363
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 103 LSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 255
           L R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 91  LFRACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 394 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 540
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +2

Query: 236 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 331
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 426 YCALGFPERTT-HPSLEPISSSARQHFIDA 340
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 426 YCALGFPERTT-HPSLEPISSSARQHFIDA 340
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 109 GKDLGKILKPVYLTISITSRCRRPM 35
           G+ +G++++  YL I+ +  CRRP+
Sbjct: 189 GECIGEVIREDYLVINSSDNCRRPL 213


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 429 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 328
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 429 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 328
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical
           protein C34C12.2 protein.
          Length = 679

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -1

Query: 209 DTKCTHSGKSSTVALFLPKSKIRIFGSGTPRQNRERFRENFKTGLSYNIDNISLSAPHGL 30
           D+K   S  S+T +   P++  +      P  +   +R   +   S +  + S SAP  +
Sbjct: 524 DSKEVQSSSSTTGSSAPPENSKKSDHFDMPDISSTLYRSRVEPISSSSSGSTSTSAPRYV 583

Query: 29  PRPILQP 9
           P+PI QP
Sbjct: 584 PKPIAQP 590


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 429 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 328
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,862
Number of Sequences: 27780
Number of extensions: 317140
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)