Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G06
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0632 - 20112297-20116562                                         34   0.11 
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    29   2.3  
01_01_0870 - 6789903-6792251                                           29   2.3  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    27   9.4  
01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149...    27   9.4  

>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 508  FICCHLHY*LPSDSLDIFSLSEGTRSQCWVGHSVPV-GLPNN 386
            F CC+L   LPS+ + + SL +     C+  HS+P+ GLP N
Sbjct: 1254 FSCCYLLRQLPSNLVTLSSLKKLNMQSCFQIHSLPLKGLPGN 1295


>07_03_0860 +
           22057309-22058453,22059833-22059964,22060328-22060412,
           22061666-22061867,22062273-22062344,22062509-22062573,
           22062682-22062741,22063033-22064379,22064463-22064607,
           22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  QVICTRFFPTPSHHIQLDPTTLMQSAA 91
           QV    + PT  HH QL P T+M  AA
Sbjct: 722 QVAQQMYIPTIQHHHQLQPPTMMHQAA 748


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 367 DARDRVCCWANRLEQNDRPNIG 432
           D   RV CW  + E+NDRP++G
Sbjct: 715 DITCRVACWCIQDEENDRPSMG 736


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 396 CPTTNPIARIFSCSLRSSKSAQRTVFFPGLATLGFQSSNCR 274
           C +T       SCSL S+  A R   FP L  LG + ++ +
Sbjct: 156 CSSTASTLVTRSCSLTSTTFAPRADIFPNLLVLGIRHTDIK 196


>01_06_0278 -
           28111655-28112531,28113896-28114029,28114131-28114992,
           28115636-28115735,28115848-28115939,28116031-28116122
          Length = 718

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 414 ILFQSVCPTTNPIARIFSCSLRSSKSAQRTVFFPGLATLGFQSSN 280
           ILF +VC T   IA +F  SL  +         PG A   F + +
Sbjct: 28  ILFSAVCCTAGIIALLFLPSLAKNTYLSENALIPGSANTLFSTED 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,911
Number of Sequences: 37544
Number of extensions: 314565
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)