Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G06
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007792-1|AAH07792.1|  386|Homo sapiens YLPM1 protein protein.       105   2e-22
AK090435-1|BAC03416.1| 1766|Homo sapiens FLJ00353 protein protein.     38   0.039
AY217665-1|AAO61690.1|  325|Homo sapiens putative RAS binding pr...    30   7.9  
AY217664-1|AAO61689.1|  337|Homo sapiens putative RAS binding pr...    30   7.9  
AK126346-1|BAC86530.1|  369|Homo sapiens protein ( Homo sapiens ...    30   7.9  

>BC007792-1|AAH07792.1|  386|Homo sapiens YLPM1 protein protein.
          Length = 386

 Score =  105 bits (251), Expect = 2e-22
 Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 15/168 (8%)
 Frame = +2

Query: 5   EVQVICTRFFPTPSHHIQLDPTTLMQSAAITXXXXXXXXXXXXXX------XXTQEPEVE 166
           E+  +   +   P H ++LD  +L+Q AAI                        +E E+ 
Sbjct: 219 EINKMADHWETAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKEEKKDAEEEESELG 278

Query: 167 SVFTSKWEKMDSSAQLARLDGT---SKPLRPSQL---SMEDYLQL-DDWKPNVAKPGKKT 325
            +  SKWE   S A+L +LDG    +K  R  +     MEDYLQL DD+    ++PGKK 
Sbjct: 279 YIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKR 338

Query: 326 VRWADLEERREQEKMRAIGFVVGQTDWNRMTDPT--LGSSALTQTKYI 463
           VRWADLEE+++ ++ RAIGFVVGQTDW ++TD +  L   AL +TKYI
Sbjct: 339 VRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI 386


>AK090435-1|BAC03416.1| 1766|Homo sapiens FLJ00353 protein protein.
          Length = 1766

 Score = 37.5 bits (83), Expect = 0.039
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
 Frame = +2

Query: 5    EVQVICTRFFPTPSHHIQLDPTTLMQSAAITXXXXXXXXXXXXXX------XXTQEPEVE 166
            E+  +   +   P H ++LD  +L+Q AAI                        +E E+ 
Sbjct: 1605 EINKMADHWETAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKEEKKDAEEEESELG 1664

Query: 167  SVFTSKWEKMDSSAQLARLDGT---SKPLRPSQL---SMEDYLQL-DDWKPNVAKP 313
             +  SKWE   S A+L +LDG    +K  R  +     MEDYLQL DD+    ++P
Sbjct: 1665 YIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEP 1720


>AY217665-1|AAO61690.1|  325|Homo sapiens putative RAS binding
           protein isoform B protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 SKWEKMDSSAQLARLDGTSKPLRPSQLSMEDYLQLDDWKPNVAKPGKK 322
           ++W + D   +++ LD T  P+   + S EDYL    +  N  KP  K
Sbjct: 86  TRWGEFDDLYRISELDRTQIPMSEKRNSQEDYL---SYHSNTLKPHAK 130


>AY217664-1|AAO61689.1|  337|Homo sapiens putative RAS binding
           protein isoform A protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 SKWEKMDSSAQLARLDGTSKPLRPSQLSMEDYLQLDDWKPNVAKPGKK 322
           ++W + D   +++ LD T  P+   + S EDYL    +  N  KP  K
Sbjct: 98  TRWGEFDDLYRISELDRTQIPMSEKRNSQEDYL---SYHSNTLKPHAK 142


>AK126346-1|BAC86530.1|  369|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44374 fis, clone TRACH3034731, weakly  similar
           to Homo sapiens Ras association (RalGDS/AF-6) domain
           family 2 (RASSF2). ).
          Length = 369

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 SKWEKMDSSAQLARLDGTSKPLRPSQLSMEDYLQLDDWKPNVAKPGKK 322
           ++W + D   +++ LD T  P+   + S EDYL    +  N  KP  K
Sbjct: 130 TRWGEFDDLYRISELDRTQIPMSEKRNSQEDYL---SYHSNTLKPHAK 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,050,791
Number of Sequences: 237096
Number of extensions: 1650984
Number of successful extensions: 3551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3546
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)