Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G06
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 28 4.9
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 4.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 4.9
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 4.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 4.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 4.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 4.9
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 28 6.4
AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical ... 28 6.4
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 257 LSMEDYLQLDDWKPNVAKPGKKTVRWADLEERREQEKMRAIGFVVGQTDW 406
L + D +D +K A+ GK + +A + + E+E+ R + +G+T +
Sbjct: 194 LEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSF 243
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 257 LSMEDYLQLDDWKPNVAKPGKKTVRWADLEERREQEKMRAIGFVVGQTDW 406
L + D +D +K A+ GK + +A + + E+E+ R + +G+T +
Sbjct: 212 LEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSF 261
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 355 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 390
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 355 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 390
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 413 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 448
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 413 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 448
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 413 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 448
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 QEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQ 256
+E ++ F K EK D +L RLDG +P P Q
Sbjct: 385 KEVTLDEGFRKKLEKTDDGWRLIRLDGEVEPEGPKQ 420
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +2
Query: 146 TQEPEVESVFTSKWEKMDSSAQLARLDGTSKPLRPSQLSMEDYLQLDDWKPNVAKPGKKT 325
+++PE S + K EK ++ KP RP +L+ E+ + K + K+
Sbjct: 93 SKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPERPDKLTEEEKPDAKEKKEIEKEKTKEK 152
Query: 326 VRWADLEERREQEKMR 373
+ + E+ +E+EK +
Sbjct: 153 EKTKEKEKTQEKEKSK 168
>AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical
protein F45D11.5 protein.
Length = 133
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -3
Query: 426 VGSVILFQSVCPTTNPIARIFSCSLRSSKSAQRTVFFPGLATLGFQS 286
+GS +L +S P P +RIF CS +S+S + T+ PG+ FQ+
Sbjct: 8 IGSSMLLESSWPPIRPTSRIF-CS-ETSQSPEVTL--PGVNAADFQN 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,335
Number of Sequences: 27780
Number of extensions: 264284
Number of successful extensions: 701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -