Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G04
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   4.7  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.2  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -2

Query: 437 LIIMITNNLLQISFLHS--HNWRTLIVG 360
           L++ I+NN+ QI++LH+  HN + +  G
Sbjct: 316 LLLAISNNIGQIAYLHAQKHNVQNIYFG 343


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 437 LIIMITNNLLQISFLHSHNWRTLIVGKRQKKERKINNL 324
           L+I  +N   +IS L    W+ LIV + Q+ +   ++L
Sbjct: 664 LVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSL 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,198
Number of Sequences: 5004
Number of extensions: 17497
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)