Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G03
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 64 1e-11
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 28 1.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.5
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 4.6
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 6.1
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 8.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.0
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 8.0
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 8.0
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 64.1 bits (149), Expect = 1e-11
Identities = 51/145 (35%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Frame = +2
Query: 68 THLYTLIVKPDNTYEVLIDNEKVESGELEADW--DFLPPKKIKDPEAKKPEDWXX--XXX 235
T+LYTLIVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIP 260
Query: 236 XXXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNP-----DYKGVWAPKQ 400
IPDPDA K P + G W P +
Sbjct: 261 DPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSE 320
Query: 401 IDNP-----AYKGPWIHPEIDNPEY 460
I NP A G W P I NP Y
Sbjct: 321 IINPKCIEGAGCGEWKPPMIRNPNY 345
Score = 55.6 bits (128), Expect = 5e-09
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +2
Query: 359 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 538
I NP+Y+G W+P I NP + G W +I NP+Y D + + VG +LW ++
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNI 399
Query: 539 IFNN 550
F+N
Sbjct: 400 RFSN 403
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELE-ADWDFLPPKKIKDP 196
+ H KK +D Y+H+Y + P + + + ++ ES + E + D+LP +K
Sbjct: 141 KEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSAMKQK 200
Query: 197 EAKKPED 217
+ P+D
Sbjct: 201 KG-GPKD 206
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 56 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPED 217
D +Y L +L+ + N+YE + + + + W FL D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 137 ESGELEADWDFLPPKKIKDPEAKKPEDW 220
E L+ LP + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 158 DWDFLPPKKIKDPEAKKPEDW 220
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 162 GTSYLRRRSRIQKQRNLKIGTTNPQS 239
GTS RRR R++K+ +KI + +S
Sbjct: 340 GTSQFRRRERVKKRHVIKIHEASNKS 365
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 152 EADWDFLPPKKIKD 193
E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 26 HLIKKDIRCKDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 148
HL C + T+L+ L V P YE L++ EK+E E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 199
+NH ++ K+ V L + DN Y+ ++ + K + L+ D P +K +
Sbjct: 995 KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054
Query: 200 AKKPE 214
K+ E
Sbjct: 1055 MKRRE 1059
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 26 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 139
H I + + +++ + HL TL KPD+ ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 164 PSRLLIHQIQPSHCR*GPRK--CYPVSR*ECTSACK 63
P+ +HQ+QP+ C P C P++ C A +
Sbjct: 731 PNIYALHQLQPTDCLPDPENTGCLPINMPLCVRASR 766
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 380 GVWAPK-QIDNPAYKGPWIHPEIDNP 454
G+ PK +D +Y G W P+ D+P
Sbjct: 130 GLGEPKFNVDGTSYDGDWGRPQNDSP 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,424
Number of Sequences: 5004
Number of extensions: 47762
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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