Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G03
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 194 6e-50
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 181 4e-46
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 169 1e-42
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 166 1e-41
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 86 2e-17
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 73 2e-13
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 32 0.29
06_02_0225 + 13257655-13260693 29 2.0
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 29 3.5
08_02_0972 - 23187294-23188034 28 4.7
07_01_0117 + 894314-896677 28 6.2
01_05_0428 + 22060431-22060850 28 6.2
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 27 8.2
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 194 bits (472), Expect = 6e-50
Identities = 90/188 (47%), Positives = 113/188 (60%), Gaps = 1/188 (0%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 199
+NHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG + WD LPPK+IKDPE
Sbjct: 163 KNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPE 222
Query: 200 AKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDY 376
AKKPEDW IPDPDA K I NP+Y
Sbjct: 223 AKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEY 282
Query: 377 KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFL 556
KG W K+I NP Y+G W P IDNP++ D +Y D + +G++LWQVKSGT+F+NFL
Sbjct: 283 KGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFL 342
Query: 557 FTDDPALA 580
TDDP LA
Sbjct: 343 ITDDPELA 350
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 181 bits (440), Expect = 4e-46
Identities = 83/188 (44%), Positives = 109/188 (57%), Gaps = 1/188 (0%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 199
+NHLIKKD+ CK D TH+YTLI++PD Y +LIDN + ++G + DW+ +PPK +DPE
Sbjct: 170 KNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRDPE 229
Query: 200 AKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDY 376
AKKPEDW I DP+A+K I NP+Y
Sbjct: 230 AKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGEWTAPTIPNPEY 289
Query: 377 KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFL 556
KG W K++ NP YKG W P I NP+Y D +Y D + +G++LWQVKSGT+F+N L
Sbjct: 290 KGPWNQKKLKNPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNIL 349
Query: 557 FTDDPALA 580
TDDP A
Sbjct: 350 ITDDPEYA 357
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 169 bits (411), Expect = 1e-42
Identities = 79/188 (42%), Positives = 106/188 (56%), Gaps = 1/188 (0%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 199
+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG + DWD LPP+KIKD
Sbjct: 161 QNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKDVH 220
Query: 200 AKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDY 376
AKKP+DW IPDP K I NP Y
Sbjct: 221 AKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAY 280
Query: 377 KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFL 556
KG W K+I NP YKG W P IDNPE+ D +LY + +G+++WQVK+G++F+N L
Sbjct: 281 KGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNIL 340
Query: 557 FTDDPALA 580
DDP A
Sbjct: 341 ICDDPEYA 348
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 166 bits (403), Expect = 1e-41
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = +2
Query: 20 RNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 199
+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G + DWD LPP+KIK+
Sbjct: 161 QNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESN 220
Query: 200 AKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDY 376
AKKP+DW IPDP K I NP+Y
Sbjct: 221 AKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEY 280
Query: 377 KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFL 556
KG W K+I NP YKG W P IDNPE+ D +LY + VG+++WQVK+G++F+N L
Sbjct: 281 KGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNIL 340
Query: 557 FTDDPALA 580
DDP A
Sbjct: 341 ICDDPEYA 348
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +2
Query: 23 NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEA 202
NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDPEA
Sbjct: 517 NHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDPEA 576
Query: 203 KK 208
KK
Sbjct: 577 KK 578
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 72.9 bits (171), Expect = 2e-13
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Frame = +2
Query: 59 DVYTHLYTLIVKPDNTYEVLID-NEKVESGELEADWDF----LPPKKIKDPEAKKPEDWX 223
D +H+YT I+KPDN +L+D EK ++ L AD DF +P K I DP+ KKPEDW
Sbjct: 173 DKLSHVYTAILKPDNEVRILVDGEEKKKANFLSAD-DFEPSLIPSKTIPDPDDKKPEDWD 231
Query: 224 XXXX--XXXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNP-----DYKG 382
I D +A+K + P + G
Sbjct: 232 ERAKIPDPDAVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDG 291
Query: 383 VWAPKQIDNP-------------------AYKGPWIHPEIDNPEY--------TPDSNLY 481
W +IDNP AYKG W P IDNP Y P+ +
Sbjct: 292 EWEAPKIDNPKCEEAPGCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF 351
Query: 482 KRDE-----ICSVGLDLWQVKSGTIFNNFLFTDDPALA 580
+ D+ I ++G+++W ++ G +F+N L DD +A
Sbjct: 352 ELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKVA 389
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 521 QVKSGTIFNNFLFTDDPALA 580
+VKSGT+F+N L TDDP A
Sbjct: 37 RVKSGTLFDNILITDDPEYA 56
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 367 VVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRV 242
+V+ W PLS + IP L+ R+ ++RFV + FLV+RV
Sbjct: 132 LVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRV 173
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 198 KQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 353
K R + T+PQS + R R L T + L+P K+ + +E H
Sbjct: 215 KSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVH 266
>08_02_0972 - 23187294-23188034
Length = 246
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 189 RIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 353
R K+RN++I +T+PQS + R R + + L+P K+ ++ H
Sbjct: 148 RPPKRRNVRI-STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIH 201
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 265 LGFLVFRVGDCGFVVPIFRFLCFWILDLLR 176
LGF+ F++G C + P+F F+ + + ++R
Sbjct: 459 LGFVSFKIGQCCY-KPVFHFMLYCVRCMMR 487
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -3
Query: 335 PSHHPNLQAYWHQG-PECAQVCP 270
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 452 PEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPAL 577
PEY L KR +I S G+ + ++ SG + L DD L
Sbjct: 235 PEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKIL 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,827
Number of Sequences: 37544
Number of extensions: 334680
Number of successful extensions: 1001
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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