Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G02
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 70 2e-13
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 31 0.13
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 28 0.91
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.6
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 27 1.6
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 3.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 3.7
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 6.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 6.4
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 6.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 8.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 8.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 8.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.4
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 69.7 bits (163), Expect = 2e-13
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Frame = +2
Query: 5 EEDAEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENE-NLSVSLVEHGLAS 181
+E EPF EE+L +K LQHD + I ++ G F+G ++V ++ N ++ L+ GLA
Sbjct: 536 QEKGEPFAEESLSLAKS-LLQHDAQVEILSVDNNGCFLGDIYVNHDTNFALKLLSQGLAW 594
Query: 182 THHTAEAS--EYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVK---YEKV 346
A S +Y++ T E A + K+G+W YV EK+ + TVK Y +
Sbjct: 595 CQGYASQSNVQYSQYHDT-EAAAKEQKVGMWHDYVPPEKKAASTEKESENTVKEPIYLDI 653
Query: 347 VITVVTSEAHFYVQKVDLG-SKLEALMEKIHQEFKTNAP 460
V++ + + F Q + G +LE LM + K+ P
Sbjct: 654 VLSDIAEDGKFSFQIIGTGIQQLETLMSDLGSLKKSFKP 692
Score = 50.4 bits (115), Expect = 1e-07
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 11 DAEPFGEEALQFSKEKCLQHDVIISIADMNKAG-NFIGWLWVENENLSVSLVEHGL---A 178
+ EP G+EA QF + LQ +V+I + D+ G +F+G + N++ L+ GL A
Sbjct: 221 EQEPCGDEAKQFVVTRLLQRNVVIELLDLAPNGVSFLGNVLHPAGNIATFLLSSGLGRVA 280
Query: 179 STHHTAEASEYARAFKTAEENAIKNKIGIWK 271
H +A E ++ +T E A +++GIWK
Sbjct: 281 DNHISALGPETMQSLRTIERKAKISRLGIWK 311
Score = 30.7 bits (66), Expect = 0.13
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +2
Query: 8 EDAEPFGEEALQFSKEKCLQHDVIIS-IADMNKAGNFIGWLWVENENLSVSLVEHGLAST 184
E EPF EA +FS+ + +S + + + G + +L+ SL+ GLA
Sbjct: 47 EGDEPFAFEAQEFSRRLVVGRPASVSTLYVIPTSKREYGRIRTSEFDLAESLLREGLAKL 106
Query: 185 HHTAEASE------YARAFKTAEENAIKNKIGIW 268
A +E Y + + A+++A + K+GIW
Sbjct: 107 RPEATRNEGTSENSYFVSLEEAQDHAQQYKLGIW 140
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 30.7 bits (66), Expect = 0.13
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 299 EVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKL-EALMEKIHQEFKTNAPL 463
EVQK ++R + EK + T FY +D K+ +A +E + KT A +
Sbjct: 147 EVQKAIEDRKEEDEKSITDTTTGMKDFYASMLDRQEKIHQAAVEGVQNSKKTGAEI 202
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 0.91
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = +2
Query: 125 LWVENENLSVSLVEHGLASTHHTAEASEYARAFKTAEEN-------AIKNKIGIWKTYVE 283
L + N N+SV+L A H T +A +AR + A N I + + + Y+
Sbjct: 155 LALRNPNISVALYAFASAKRHLTDDAVAFARQARVALTNITTTDSLLILVLLAVTQLYI- 213
Query: 284 EEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYV 385
+ +I++ A ++ VK++ ++T + E Y+
Sbjct: 214 PKSDIQLFNFAVDQVVKFDASLMTSPSDEIITYL 247
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 308 KTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALMEKIHQEFKTNAPL 463
K A+N+T+ YE+ + S Q DL + E L ++I + N L
Sbjct: 297 KQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSL 348
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 137 NENLSVSLVEHGLASTHHTAEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEI 298
NEN S + H H T A A K ++ENA + +GI +++V+ +K +
Sbjct: 65 NEN---SYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSV 115
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 440 PGVSSPSTLLVYCRGQLSAHRSALLTSQR 354
P S+P TL++ CR Q RSAL+ S +
Sbjct: 674 PWTSTPETLVLLCR-QFELTRSALVQSHQ 701
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 156 ETDKFSFSTHSQPMKLPALFISAILMITSCCRH 58
E+D + F T S ++P + + L++ S C++
Sbjct: 480 ESDMYGFLTWSMGSQIPGIITAFTLLLASLCKN 512
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 3.7
Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Frame = +2
Query: 32 EALQFSKEK-CLQHDVIISIADMNKA-GNFIGWLWVENENLSVSLVEHGLASTHHTAEAS 205
EAL ++K C +++ ++ K G +IGW + + + +
Sbjct: 687 EALSLREDKDCYTMSLLLDVSSTGKIRGTWIGWAVIRPRKA------YTMKEADELLQTD 740
Query: 206 EYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYV 385
R F T + +G T V + + + + ++ + S A +
Sbjct: 741 ARLRLFHTVSSRLRTHHLG---TDVPLSRYCRLVRRWDEESCSFDPNETNLFISSAVEVL 797
Query: 386 QKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSR 487
++ L + A+ + QEF+ NA L +PSR
Sbjct: 798 RETLLDAANRAVASHLRQEFRENAFLRTQRLPSR 831
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 6.4
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +2
Query: 221 FKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDL 400
+KT EN K I ++ KE E+QK Q + + EK+ I EA ++++
Sbjct: 53 YKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSI-----EARKQQLEIEI 107
Query: 401 GSKLEALMEKIHQEFKT 451
++L EK+ KT
Sbjct: 108 RNQLLQYAEKLRIVVKT 124
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 110 NFIGWLWVENENLSVSLVE 166
N I WLW++N ++S VE
Sbjct: 434 NSICWLWIKNPTHAISRVE 452
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 26 GEEALQFSKEKCLQHDVIISIADMNKAGNFI 118
G QF + CL + +S+ MNKA FI
Sbjct: 103 GSGKSQFCMQLCLMVQLPLSLGGMNKAAVFI 133
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 251 NKIGIWKTYVEEEKEIEVQKTAQNRTVKYEK 343
N+ + K EEE+ I QK + R + YE+
Sbjct: 633 NQKNVLKAQKEEEERIAQQKREEKRRLAYEE 663
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 8.4
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +2
Query: 146 LSVSLVEHGLASTHHTAEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNR 325
L++ GL S A+ A AF ++NAIK ++ + +Y E + + + K ++
Sbjct: 121 LALHYQRRGLKSCLVAADTFR-AGAFDQLKQNAIKARVPYFGSYTETD-PVVIAKEGVDK 178
Query: 326 TVKYEKVVITVVTSEAHFYVQKV 394
VI V TS H Q++
Sbjct: 179 FKNDRFDVIIVDTSGRHQQEQEL 201
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 404 SKLEALMEK-IHQEFKTNAPLPGSYVPSRG 490
S L+ L+EK +H K+NA P S PS+G
Sbjct: 120 SGLKNLLEKAMHPGHKSNANSPTSESPSKG 149
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 177 ASPCSTNETDKFSFSTHSQPMKLPALFISAI 85
A+P S E +F+F T ++P ++ L + +
Sbjct: 424 ATPTSFTERKRFAFDTRNRPPEVRELIVECL 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,467
Number of Sequences: 5004
Number of extensions: 39935
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -