Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G02
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 82 2e-16
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 67 9e-12
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641... 29 1.6
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 27 6.4
08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981 27 8.5
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 27 8.5
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 27 8.5
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 8.5
>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 82.2 bits (194), Expect = 2e-16
Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Frame = +2
Query: 17 EPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLAS-THHT 193
EP+ EA+ + + LQ DV I + +++ G F+G LW N++ L+E GLA +
Sbjct: 625 EPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFG 684
Query: 194 AEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEA 373
+ A AE++A + K+ IW+ YVE E E+ ++++ + KVV+T V
Sbjct: 685 LDRIPDANVLMRAEQSAKQQKLKIWENYVEGE-EVSNGSASESKQKEILKVVVTEVLGGG 743
Query: 374 HFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRG 490
FYVQ V ++ ++ +++ +AP+ G++ P +G
Sbjct: 744 KFYVQTVG-DHRVASIQQQLASLKLKDAPVIGAFNPVKG 781
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 66.9 bits (156), Expect = 9e-12
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 17 EPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLAS-THHT 193
EP+ +EA+ + + LQ +V I I +++ G F+G LW N N++ L+E GLA +
Sbjct: 631 EPYSDEAITMMRRRILQRNVEIEINTVDRTGTFLGSLWESNINVASVLLEAGLAKISSFA 690
Query: 194 AEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEA 373
+ A+ E+ A + K+ +W+ Y +E+EV + + KV++T V
Sbjct: 691 VDKMPDAQVLLKTEKIAKQKKLKVWENY----EEVEVSNVSLYDNKETLKVIVTEVLGAG 746
Query: 374 HFYVQ 388
FYVQ
Sbjct: 747 MFYVQ 751
>02_05_0907 -
32663544-32663623,32663673-32663863,32664065-32664162,
32664406-32664519,32664589-32664646,32664778-32664867,
32665414-32665505,32665898-32666008,32666120-32666374,
32666512-32666577,32666725-32666853
Length = 427
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 251 NKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALMEK 430
N +G W Y+E +EIE Q V+++ +V+ + + + LGSKL +L K
Sbjct: 213 NSLGTWG-YIEAIREIEHQIQISG-DVQFDDIVVACGSGGT---IAGLALGSKLSSLKAK 267
Query: 431 IH 436
+H
Sbjct: 268 VH 269
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 74 VIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHTAEASEY 211
++ + + K +F+GW E +++ V+ L+S H E +Y
Sbjct: 241 LVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRLEEDEDY 286
>08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981
Length = 395
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 2 HEEDAEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHG 172
H P G+E + + +K LQ V A N + GWL + N ++S +L +G
Sbjct: 40 HMNSDLPTGKEEKERNLDKILQDQVTRGGAASNSSAVKNGWLTLLNNHMSDALRYYG 96
>07_03_0744 +
21121757-21122202,21122316-21122737,21122992-21123117,
21123198-21123319,21123413-21123623,21123955-21124192,
21124284-21124431,21124547-21124879
Length = 681
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 116 IGWLWVENENLSVSLVEHGLASTHHTAEASEYARAFKTAEE 238
+GW + +LVEH A+T A A +Y F T EE
Sbjct: 164 VGWFNAAVAKILAALVEHTWATTTSNATAKKY---FSTGEE 201
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 281 EEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLE 415
E+EK + ++ + R + +TV +S Q++DLG ++E
Sbjct: 109 EDEKSKQTKRKRKGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVE 153
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 27.1 bits (57), Expect = 8.5
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +2
Query: 167 HGLASTHHTAEASEYARAFKTAEENAIKNKIGIW-KTYVEEEKEIEVQKTAQNRTVKYEK 343
+GL S HT + E++ ++ A K W KT E E+E + +T T
Sbjct: 588 YGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIREHEEEEALPQTFSVYT----- 642
Query: 344 VVITVVTSEAHFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRGGL 496
S H + Q L + + + +E++ F+ + GS++ SR L
Sbjct: 643 ------GSSTHKFAQ--GLATAVASHLEQVGAPFRASDSQLGSFISSRDDL 685
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,692
Number of Sequences: 37544
Number of extensions: 304739
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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