Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G02
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 117 6e-27
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.067
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.067
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 0.62
U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical pr... 30 1.1
U53340-1|AAA96206.1| 658|Caenorhabditis elegans Hypothetical pr... 29 1.9
U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical p... 29 1.9
AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical... 29 1.9
AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein. 29 2.5
AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineag... 29 2.5
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 28 3.3
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 3.3
Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical pr... 28 4.4
U51995-6|AAA96074.1| 430|Caenorhabditis elegans Hypothetical pr... 27 5.8
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 117 bits (281), Expect = 6e-27
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 11/173 (6%)
Frame = +2
Query: 14 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENE-------NLSVSLVEHG 172
AEPF +EA F+++ LQH+V + + +K GNF+G+L+V + NLS +LVE+G
Sbjct: 575 AEPFADEAAAFTRKLVLQHEVQLEVESTDKNGNFVGYLYVSPDGNTSRAINLSEALVENG 634
Query: 173 LASTHHTAEASEYARAFKTAEENAIKNKIGIWKTYVEE--EKEIEVQKT-AQNRTVKYEK 343
LAS H TAE S + A +AE A K K IW + EE ++E+EVQ+ R + +
Sbjct: 635 LASLHFTAERSGHYNALLSAENKAKKAKKNIWANFTEEQHQEEVEVQQADTSERKQNFRQ 694
Query: 344 VVITVVTSEA-HFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRGGLC 499
V +T + A F Q ++ G K+E + ++ Q + PL GSY RG LC
Sbjct: 695 VAVTDIAPGALRFSAQNIEDGPKIEKMTTEMRQALAEHPPLAGSYTTKRGDLC 747
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 33.9 bits (74), Expect = 0.067
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 14 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHT 193
AE GEE LQ KEK + + + D ++ G+ +NE+++ + + A
Sbjct: 15087 AENKGEETLQEVKEKLKKGKAVEKVQDESRRGSL--QASSDNESVTTTSEKRSEAELEKN 15144
Query: 194 AEASEYARAFKT---AEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVT 364
+E S ++ A + A K K E++K++ V+K A+ VK +K I +
Sbjct: 15145 SEKSAEKKSTSADLEAADKAETEKSETGKETTEKKKKV-VKKVAKKGLVKADKSKIELTA 15203
Query: 365 -SEAHFYVQKVDLGSKLE 415
E Q + G +E
Sbjct: 15204 GKEGEISAQVAETGVSVE 15221
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 33.9 bits (74), Expect = 0.067
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 14 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHT 193
AE GEE LQ KEK + + + D ++ G+ +NE+++ + + A
Sbjct: 15087 AENKGEETLQEVKEKLKKGKAVEKVQDESRRGSL--QASSDNESVTTTSEKRSEAELEKN 15144
Query: 194 AEASEYARAFKT---AEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVT 364
+E S ++ A + A K K E++K++ V+K A+ VK +K I +
Sbjct: 15145 SEKSAEKKSTSADLEAADKAETEKSETGKETTEKKKKV-VKKVAKKGLVKADKSKIELTA 15203
Query: 365 -SEAHFYVQKVDLGSKLE 415
E Q + G +E
Sbjct: 15204 GKEGEISAQVAETGVSVE 15221
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 254 KIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAH-----FYVQKVDLGSKLEA 418
K+ I KT++++E+ QK A+ T ++E + E H V+K ++ K+ A
Sbjct: 352 KLAIPKTFMKKEETPSFQKVAKRPTRQWEPKKQESLEQEEHKETVKEEVKKEEVKEKVPA 411
Query: 419 LMEKIHQEFK-TNAPLPGSYVP 481
+E+ H E K AP+ Y P
Sbjct: 412 KVERKHWEPKVAPAPVIDGYAP 433
>U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical
protein W06B4.3 protein.
Length = 962
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 263 IWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALME 427
IWKTY++ + + + A+ R + V+ +A FY+Q+ + + E L +
Sbjct: 345 IWKTYLDRGEYQKALQIARTRVAIEPDALEMVLRKQADFYIQEKNFTAAAEILAQ 399
>U53340-1|AAA96206.1| 658|Caenorhabditis elegans Hypothetical
protein F02E8.4 protein.
Length = 658
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 255 LFLMAFSSAVLKARAYSDASAVWWVEASPCSTNETDKFSFSTHSQPMKLPALFIS 91
L + + S V +A+ ++S++ +V A+ CST+ F MK+ A I+
Sbjct: 239 LNISSVSEEVQNVQAFQESSSLPFVHANQCSTSSAKNFDLFPVDPRMKIDARIIN 293
>U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical
protein C18A3.3 protein.
Length = 340
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 262 HMENLRRRGEGNRSTKNRSE*NREVRESGHYRCDVRSALLCAES 393
HM+ +R+R G + K R E R +RE + V+ +L A++
Sbjct: 171 HMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAKN 214
>AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical
protein Y113G7B.16 protein.
Length = 489
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 188 HTAEASEYARAFKTAEENAIKNKIGIWKTYVEE--EKEIEVQKTAQNRTVKYEKVVITVV 361
+ AEA++ + E A++ +I V + K E K A++ ++EK + +
Sbjct: 108 YLAEAAQILQRLAQYEIPALRKQISKMDQSVTDAIRKHSEYGKQAEDGRKQFEKEISRMQ 167
Query: 362 TSEAHFYVQKVDLGSKLEALMEKIHQEFK 448
H + ++L + L A EKI E +
Sbjct: 168 LKGVHLRKELLELAADLPAFYEKITAEIR 196
>AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein.
Length = 435
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 183 PTTLPRRPSMPELSKRPRRMP 245
P PR P PEL+ PRR+P
Sbjct: 398 PPPAPRAPQAPELASGPRRIP 418
>AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineage
defect protein 2 protein.
Length = 435
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 183 PTTLPRRPSMPELSKRPRRMP 245
P PR P PEL+ PRR+P
Sbjct: 398 PPPAPRAPQAPELASGPRRIP 418
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 26 GEEALQFSKEKCLQHDVIISIADMNKAGN 112
G+E + + EK Q DVII I D++ GN
Sbjct: 490 GQETIDYLTEKRDQLDVIIHIGDISDVGN 518
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 26 GEEALQFSKEKCLQHDVIISIADMNKAGN 112
G+E + + EK Q DVII I D++ GN
Sbjct: 490 GQETIDYLTEKRDQLDVIIHIGDISDVGN 518
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 212 ARAFKTAEENAIKNKIGIWKTYVEEEKEIE-VQKTAQNRTVKYEK 343
++ FK + +K++ ++ T +EE+ E+E + +NRTVK+ K
Sbjct: 2176 SKHFKVLDRAIVKSRYELY-TIMEEDDEVELIVNMLENRTVKHGK 2219
>Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical
protein W02B8.6 protein.
Length = 738
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 197 EASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKV 346
+ + +A+ E + +KN++ K Y +++ ++KT Q +K +K+
Sbjct: 100 DITSHAKCLVDLESDGLKNRLLKRKKYFDKKTRSSIEKTPQKTVMKPDKL 149
>U51995-6|AAA96074.1| 430|Caenorhabditis elegans Hypothetical
protein F07G6.3 protein.
Length = 430
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 423 WRRYTRSSKPTRRCPDRTCRAG-GVC 497
W+R+ R S+P + P +CR+ GVC
Sbjct: 372 WQRFVRESRPRKDPPWSSCRSEVGVC 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,063
Number of Sequences: 27780
Number of extensions: 237256
Number of successful extensions: 744
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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