Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G02
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 317 QNRTVKYEKVVITVVTSEAHFYVQKVDL 400
           +N+TVKY   +  ++  +  F +  +D+
Sbjct: 100 RNKTVKYSARMHAIIACQMEFQLYPMDI 127


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 278 VEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSK 409
           V++E+E E +K  +   ++YE  +    T E    +++    SK
Sbjct: 45  VQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSK 88


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 122 WLWVENENLS 151
           W W +NEN S
Sbjct: 108 WTWAKNENCS 117


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 496 QTPPARHVRSGQRRV 452
           Q PP  H RS ++RV
Sbjct: 611 QEPPQWHTRSTEKRV 625



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 365 SEAHFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSR 487
           +E HF   +  L  ++E     +H E   NA    S   SR
Sbjct: 724 TEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESR 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,994
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)