Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G01
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   3.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 206 ERVVYLGTTFCG 241
           ER++Y GT +CG
Sbjct: 27  ERIIYPGTLWCG 38


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 206 ERVVYLGTTFCG 241
           ER++Y GT +CG
Sbjct: 32  ERIIYPGTLWCG 43


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 487 HNICGRFFAN 516
           H +CGRF+ N
Sbjct: 123 HEVCGRFYGN 132


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 206 ERVVYLGTTFCG 241
           ER++Y GT +CG
Sbjct: 32  ERIIYPGTLWCG 43


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 354 RIHILRLHNDYLIVVNLFTNYQIY*KLIIFVT 259
           +IH+  LH++ LI +  F   Q + +  +FVT
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQ-FKESSLFVT 181


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 127 QDFSAMIIPKGILLLEISMSFNL*ITHLKIVKNIFYYYC 11
           Q+  + ++ KGI L +  +S    I  +   +N  YY C
Sbjct: 193 QEAGSNLVAKGIDLSDFYLSVEWDILEVPASRNEEYYPC 231


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 13   NNNKICSSQSSNVLSI 60
            ++NKI SS SS VLS+
Sbjct: 1477 SHNKIGSSPSSPVLSV 1492


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 13   NNNKICSSQSSNVLSI 60
            ++NKI SS SS VLS+
Sbjct: 1473 SHNKIGSSPSSPVLSV 1488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,839
Number of Sequences: 438
Number of extensions: 3397
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)