Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F24
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 27 2.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.7
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 26 4.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.8
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 4.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 6.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.3
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 8.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.3
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 507 VHNILDVDKDGLISFNDFV 563
V N+ D DK+G I F +F+
Sbjct: 68 VFNVFDADKNGYIDFKEFI 86
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 319 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTP 450
RR++ + P P PS N KPI GN+ Q+P+ +P
Sbjct: 178 RRSSAGTDPFSPVSPSNP---NFLTPLKPIDGNQEWQQSPLESP 218
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 346 NEPPRPSGDATANTTAAPKPIAGNENLIQ 432
N PP P+ A NTT A P+ I+
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIK 1052
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +3
Query: 495 KMRTVHNILDVDKDGLISFNDFVL 566
K+ + ++ D+D DG+ F++F +
Sbjct: 41 KLEKIWDLADIDDDGMFDFDEFAI 64
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 586 GLNLSAKRTKSLNEISPSLSTSRMLWTVRIL 494
GL + +LNE+S ++ R+ W++R+L
Sbjct: 466 GLEHGSTDNSTLNEVSTEETSIRICWSLRVL 496
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 495 KMRTVHNILDVDKDGLISFNDFVLFAERFNPSG 593
KM T++++L D+ G + + +FA FNP G
Sbjct: 209 KMITIYDVLSGDQVGQLRGHAAWIFAVAFNPVG 241
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 334 ASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 462
A++P P P A A TT P+A + P P P A
Sbjct: 363 AAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAA 405
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 380 QTPRPPRNRSQETRI*FRIRFGLRHRMQGI*SFRI 484
QT R RN+ +E I +IRF L Q I +F +
Sbjct: 232 QTSRYARNKQKEINILQQIRFNLERICQDIGNFDV 266
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 328 NLASWPNEPPRP-SGDATANTTAAPKPIAGNENLIQN--PIRTPTPNARDLIVQN 483
N A+ P PP+ + T NT A+P + + +QN P+ + A ++ QN
Sbjct: 247 NQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSPAMAVVPQN 301
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 575 LSEKDEIIERDQPVLVYIQDVV 510
L+ + RDQP +YIQDV+
Sbjct: 919 LTHIGQAFSRDQPYKIYIQDVM 940
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 319 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 462
R A ++ P P PSG A + P PI+ P+ TPT A
Sbjct: 634 RPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQ-HGTPLATPTMRA 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,674
Number of Sequences: 5004
Number of extensions: 45248
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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