Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F24
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0173 + 21502765-21504216 32 0.40
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 31 0.69
07_03_1382 - 26170563-26170631,26171151-26171843 30 1.2
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 30 1.2
03_06_0094 + 31610866-31611288 29 2.1
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 2.8
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 3.7
04_04_0199 - 23519597-23520282,23520913-23521471 29 3.7
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 28 4.9
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 28 4.9
04_03_1000 + 21604164-21605387,21605467-21605817 28 4.9
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 6.5
04_03_1035 - 21887562-21890030 27 8.5
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 27 8.5
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 8.5
>03_05_0173 + 21502765-21504216
Length = 483
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 519
P PP P G A + P N+ L+ N PTP + L+ N +TT+
Sbjct: 272 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTT 330
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 370 DATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 519
+A + AP I GN +QN + P+ + +VQN V+ +P+++S
Sbjct: 159 NADVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLVQNVDVLVKQPTSSS 208
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 325 ANLASWPNEPPRPSGDATANTTAAPKPI 408
A L P PP+PSGDA N P P+
Sbjct: 180 AQLGPPPPPPPQPSGDANENPPPPPPPL 207
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 319 RRANLASWPNEPPRPSGDATANTTAAPK 402
R LA P EP P+ A A T AAPK
Sbjct: 177 REERLAQGPREPAAPAAAAPAQTAAAPK 204
>03_06_0094 + 31610866-31611288
Length = 140
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 304 SVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLI 429
S GGRR A P P P D TA AAPKP + +
Sbjct: 78 SPAGGRRRRGAVAPLVFPLPEEDDTAVAAAAPKPAVARKRRV 119
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 349 EPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVR 498
+P G + TAAP+ A N L+ N TP+ +A + N +VR
Sbjct: 585 QPISHYGSIPSGATAAPEAAATNSELVCNSGATPSASATGAAMTNLQLVR 634
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 489 RRKMRTVHNILDVDKDGLISFNDF 560
R +R V ++ D DKDG++SF +F
Sbjct: 415 RELLRKVWDLSDQDKDGMLSFREF 438
>04_04_0199 - 23519597-23520282,23520913-23521471
Length = 414
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 581 EPLSEKDEIIERDQPVLVYIQDVVDGSHLTTP 486
+ L E I VL +Q+++DG H+ TP
Sbjct: 233 QKLEEASNTIREKNSVLSQLQELIDGMHIATP 264
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 352 PPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTSWM 525
PP P G +T + TA P P AG P R R + + + R P +W+
Sbjct: 23 PPTPRGMSTPDGTATPPPAAGRG--AATPARRVVEGLRGYLEEVGHLTRLNPQ-DAWL 77
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 492 RKMRTVHNILDVDKDGLISF 551
RK+R++HN LD ++ GL+ +
Sbjct: 11 RKLRSLHNALDCERSGLVRY 30
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 307 VRGGRRANLASWPNEPPRPSGDATANT-TAAPKPIAGNENLIQNPIRTPTPNARDLI 474
VR GRR + + E P GDA T P + G E + + R +A D +
Sbjct: 36 VREGRRVVIVEYEREHPLYPGDAVKETHVLPPDSLDGGEGRLTDKARGAVSDAADRV 92
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 308 SAAGDARISRAGRTSRQGPQAMLQQTPRPPR 400
+ AG + SR R R+GP A T PPR
Sbjct: 41 NGAGQTQASRTARKRRKGPVADPSSTELPPR 71
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 245 SSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSR 355
+S+ NP K + CGL+P AA RIS A ++R
Sbjct: 38 NSSSNPSKQHLA-CGLVPAAGGAAAGYRISCASVSNR 73
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 265 VW-INVT*FGALVTQKTAVHLSKLKTDRNPNLIIETAILSFTIF 137
VW + + A+V Q T V LS L++DR+ + SFT+F
Sbjct: 351 VWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVF 394
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 313 GGRRANLA-SWPNE-PPRPSGDATANTTAAPKP 405
GGRRA A S+ N PPRPS ++ + +P+P
Sbjct: 136 GGRRACEAFSFKNRAPPRPSSSQASSPSLSPQP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,400
Number of Sequences: 37544
Number of extensions: 328622
Number of successful extensions: 1350
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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