Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F24
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81487-1|CAB03995.2| 288|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 29 3.3
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 28 5.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 5.8
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 5.8
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 5.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 27 7.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 27 7.6
>Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical
protein T19B10.6 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -2
Query: 534 PCLHPGCCGRFASYDARILNDQIPCIRCRSPNRILNQILVSCDRFRGGRGVCCSIA*G-P 358
PC P F +DAR + C + R+ + RGGRG CSI P
Sbjct: 16 PC--PDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGGLCSIRLSKP 73
Query: 357 WRLVRPAREI 328
+RP ++
Sbjct: 74 LLTLRPRSDL 83
>Z81487-1|CAB03995.2| 288|Caenorhabditis elegans Hypothetical
protein C54E10.2 protein.
Length = 288
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 519 LDVDKDGLISFNDFVLFAERFNPS 590
LD D+DGL++++D + F ++ N S
Sbjct: 244 LDCDRDGLVTYDDMIRFFQKNNDS 267
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIA 411
P PP P+ ATA APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 471 DRSEFWRRKMRTVHNILDVDKDGLISFNDF 560
D+ F RRK+R ++N+ D + L F D+
Sbjct: 67 DKETFLRRKLRKIYNLKQDDFENLREFGDY 96
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 215 SRFLCYQCSKSSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRP 394
SR++CY SKS NV+ ++ LP A SR+ T ++ T P
Sbjct: 248 SRYICYDASKSDNVSMDSVFVESPHSLPTNV-APRIPPSSRSSFTQHSNDSGVVLST--P 304
Query: 395 PRNRSQET 418
P + S +T
Sbjct: 305 PTSSSAKT 312
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 519
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 519
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 519
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 337 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 456
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 538 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 577
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 337 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 456
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 364 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,840
Number of Sequences: 27780
Number of extensions: 271223
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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