Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F22
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    54   3e-08
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    53   7e-08
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   1.2  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    27   5.0  
07_03_0109 + 13502604-13503059,13503729-13504682                       26   8.7  
05_03_0416 + 13684604-13688050                                         26   8.7  
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706     26   8.7  

>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 26/73 (35%), Positives = 40/73 (54%)
 Frame = +1

Query: 118 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 297
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 298 QARNRGNYYVPGE 336
           +AR +G +YV  E
Sbjct: 70  EARMKGGFYVSPE 82


>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +1

Query: 106 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 285
           K   VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 286 RLARQARNRGNYYVPGE 336
           +L R+AR +G +YV  E
Sbjct: 67  QLKREARMKGGFYVSPE 83


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 316
           R+G KS+  P N  K+   R +M S+ +  L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 93   RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH*EEERN 227
            R + E   CS +S++AP  E   P + S+ + +E    H  E+ +
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNS 1347


>07_03_0109 + 13502604-13503059,13503729-13504682
          Length = 469

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 181 SEDGELGVPPSFYGASRLIPEQLAT 107
           S + E  VPP +YG + L P   AT
Sbjct: 317 SREEEAAVPPGYYGNAHLSPMVTAT 341


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 324  IIIATVTSLSCQSDFITLLDAVFFDILFGS 235
            + I  +T  SC  DF+  LDA+ +  +FGS
Sbjct: 949  LTIIKMTGSSCGWDFLQYLDALEYFNIFGS 978


>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
          Length = 265

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   TRAAWSFIPQHDGCDYRKEG 62
           TR  +++ P HDG  +RK G
Sbjct: 42  TRTEYTYAPYHDGYQWRKYG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,694
Number of Sequences: 37544
Number of extensions: 174112
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)