Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F20
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 79 5e-16
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 65 8e-12
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 32 0.070
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.49
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 2.6
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 4.6
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.6
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 4.6
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 6.1
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 6.1
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 6.1
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 25 6.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 6.1
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 6.1
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 6.1
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 6.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 8.0
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 79.0 bits (186), Expect = 5e-16
Identities = 49/132 (37%), Positives = 70/132 (53%)
Frame = +1
Query: 181 ETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGI 360
E ++ LP V++RI LR LQK++ D+E++F E+ LE Y K Y P+F++R+E+V G
Sbjct: 66 EGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGA 125
Query: 361 YEPTEEECLNPWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPD 540
EPTEEE + E DE N+ K ++K E D KGIP+
Sbjct: 126 DEPTEEEIK---KGEAADE--------------NEKKEPTSSESKKQEGGDD--TKGIPE 166
Query: 541 FWYNIFRNVSML 576
FW +NV L
Sbjct: 167 FWLTAMKNVLSL 178
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 64.9 bits (151), Expect = 8e-12
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Frame = +1
Query: 127 SGITRNE--MLAAITSRIQVET------LASLPPNVRKRIRALRTLQKQFVDIEAKFYSE 282
SG+ RN ML+ I R+ + SL P V+ RI AL+ LQK I+ +F +
Sbjct: 56 SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115
Query: 283 VHALECKYEKLYKPLFEKRAEIVNGIYEPTEEE 381
+ LE KYEK Y+P+F +RAEI+ G+ EP ++E
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDE 148
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 517 PNVKGIPDFWYNIFRNVSML 576
P+ KGIP+FW NV ++
Sbjct: 161 PDPKGIPEFWLTCLHNVFLV 180
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 31.9 bits (69), Expect = 0.070
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 244 KQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEIVNGIYEPTEEECLNPWRDETEDEDL 423
++F +I K++ + + L C Y L K LFE+ A I + E L ET+DEDL
Sbjct: 880 REFQEIAEKYHHQ-NLLSCYYLHLSKKLFEESAYI-----DALEFSLLADASKETDDEDL 933
Query: 424 ARAV 435
+ A+
Sbjct: 934 SIAI 937
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.1 bits (62), Expect = 0.49
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +1
Query: 238 LQKQFVDIEAKFYSEVHALECKYEKLYKPLFEKRAEI--VNGIYEPTEEECLNPWRDETE 411
L +++ D+ + S V + E Y+ +K F + + + I +EE + W DE
Sbjct: 183 LLEEYPDLRKQMESLVPS-EVSYDDFWKRFFWHKEVVQPIKAIQSGNDEEEIFSWGDERS 241
Query: 412 DEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGI 534
DE+ + Q +E + +N SA +D V +
Sbjct: 242 DEEESDNEQVN--DEKKQSSEEDTTENNSAAEVIDETVNDL 280
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 292 LECKYEKLYKPLFEKRAEIVNGIYEPTE 375
+ CKYE+++ P A +V GI+ E
Sbjct: 248 IACKYEEIHPPSIYNFAHVVQGIFTVDE 275
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 256 PRTVFVMFAERVYVYAHWVVET-PAFQLGCGWL 161
P +F + Y Y HW+V T GCG L
Sbjct: 457 PAGIFWLSWSGYYSYVHWIVPTLSGLATGCGIL 489
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 218 VYALCEHYKNSSWTLRLNSTVKF 286
+ ALCE K SWT+ + + F
Sbjct: 48 IQALCERLKEQSWTIVFKTLIVF 70
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 180 NLDAAGYSG*HFISGDTAFHEMFS*FTAGNNFFFLSRLDIGCVI 49
NLD Y G + GD FHE+ + +++ +L + C+I
Sbjct: 157 NLDVGSYDGILSVGGDGLFHEVINGLGERDDYLEAFKLPV-CMI 199
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 244 KQFVDIEAKF-YSEVHALECKYEKLYKPLFEKRAEIVNGI 360
+ ++E +F +E+ L+ K +L++PLFE+R +I+ I
Sbjct: 8 ENLANLEQEFGKAEIEILK-KQNELFQPLFEQRRDILKTI 46
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 444 GGLDGPCKIFIFRFIPPGVQALFLCWF---IYAVHYFSALFKQWFI*LLVFAFQSVNFTV 274
G L+GP +IPP +L W ++ +Y +F W +Q NFT+
Sbjct: 671 GQLNGPLIFGGTGYIPPATPVNYLAWSGIGLFFNYYLKKIFADW--------WQKYNFTL 722
Query: 273 EFSLN 259
+L+
Sbjct: 723 SAALD 727
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 272 NLASMSTNCFCNVRRARIRLRTLGGRDASVSTW 174
++ + ++NCFC R +GG DA S W
Sbjct: 189 DIKAHNSNCFCIEFSPDNRHLAIGGADAITSLW 221
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/55 (20%), Positives = 23/55 (41%)
Frame = +1
Query: 382 CLNPWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFW 546
C N + ++ V + ++N N+ G+D+++ E D N + W
Sbjct: 75 CFNSHSQNMAEGSISIPVISHSMNVENEVSTAEGQDSRTGESENDQNAMIVRSIW 129
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 385 LNPWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPD 540
+ P DE E+E+ A ++ EG D+ + ED+ + D + +G D
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGEND 221
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 220 IRALRTLQKQFVDIEAKFYSEVHALECKYEKLYKPLFEK-RAEIVNGIYEPTEEECLN 390
+R LRT++K+ + + + S LE L LFE + + + + + E LN
Sbjct: 746 VRGLRTIKKEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVPDARDAEVLN 803
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 563 FLNILYQKSGIPLTFGSIR 507
+LNIL +KSG+P + G ++
Sbjct: 299 YLNILVKKSGMPFSLGVVQ 317
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -3
Query: 465 IISFINGGGLDGPCKIFIFRFIPPGVQALFLC------WFIYAVHYFSALFKQWFI*LLV 304
+++F+N + P + F G+ +L WF + Y S F+ +F+
Sbjct: 26 LVAFVNNTTISKP---YFSTFFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFA 82
Query: 303 FAFQSVNFTVEFSLN 259
FAF + T + S+N
Sbjct: 83 FAF-DFDVTSDDSIN 96
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 304 YEKLYKPLFEKRAEIVNGIYEPTEEECLNPWRDETEDEDLARAVQATAINE 456
Y++L+KP+F ++ +YE EE N +D+ L+ V ++ +
Sbjct: 278 YDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKDDRLSLQVFVASLEQ 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,753
Number of Sequences: 5004
Number of extensions: 49891
Number of successful extensions: 198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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