Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F18
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 256 2e-69
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 255 5e-69
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.2
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.3
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 7.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.3
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 9.7
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 256 bits (627), Expect = 2e-69
Identities = 122/204 (59%), Positives = 144/204 (70%)
Frame = +3
Query: 45 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 224
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 225 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 404
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 405 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 584
V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180
Query: 585 SQTKGGSRRAAWLRRNTLQLRRKR 656
+ + + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 255 bits (624), Expect = 5e-69
Identities = 121/204 (59%), Positives = 144/204 (70%)
Frame = +3
Query: 45 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 224
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 225 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 404
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 405 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 584
V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180
Query: 585 SQTKGGSRRAAWLRRNTLQLRRKR 656
+ + + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 131 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 45
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = -1
Query: 251 TTAHADSEDNITL-LGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKSHNIAQLFPI 75
T +H+ S N+ L + PSR + + +H S + + K + I PI
Sbjct: 140 TVSHSTSSSNVPRSLNKIHDPSRFIKDNDVENRIHVSSASKVASISNTSKPNPIVSENPI 199
Query: 74 QLLYISVRAHLDESVNKNLSVYPR 3
+S+ + N +PR
Sbjct: 200 SATSVSIEIPIKPKELSNNLPFPR 223
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 411 QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 515
+ S KY E P H + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 149 TSQLAILPHSYTQEKSHNIAQLFPIQLLYISVRAHLDESVNKNLSV 12
+SQL L H+Y +EKS N L IQ L D+ V+ +
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQI 478
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 328 LATCSLLLRSVLVAGVVVYACLIHTG 405
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 592 PREVPVAPPGYVATPCNCVAS 654
P PV P GY T CV+S
Sbjct: 259 PESYPVPPSGYPLTSSTCVSS 279
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 590 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSL 462
L E + T+ FPC T+HL + + + + +I N++
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNNV 562
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 534 LTSAGKSSRGLGKG-HRFSQTKGGSRRAAWLRRN 632
++SAG S G GKG + T +RRAA RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,667
Number of Sequences: 5004
Number of extensions: 51266
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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