Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F18
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 239 1e-63
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 237 6e-63
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.004
01_01_0652 + 4975091-4975585 30 1.9
04_03_0563 - 17195605-17196681 29 2.5
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 29 3.3
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 3.3
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 3.3
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 5.7
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 7.6
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715... 28 7.6
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 7.6
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 239 bits (585), Expect = 1e-63
Identities = 113/205 (55%), Positives = 139/205 (67%), Gaps = 1/205 (0%)
Frame = +3
Query: 45 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 224
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 225 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 404
++R+ YGKPK G+ QLK RN +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 405 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHR 581
V +DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 582 FSQTKGGSRRAAWLRRNTLQLRRKR 656
+ + SRRA W R T+ LRR R
Sbjct: 181 HHKAR-PSRRATWKRNQTVSLRRYR 204
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 237 bits (580), Expect = 6e-63
Identities = 112/204 (54%), Positives = 138/204 (67%), Gaps = 1/204 (0%)
Frame = +3
Query: 48 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVI 227
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 228 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 407
+R+ YGKPK G+ QLK RN +S+AEE NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 408 AQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRF 584
+DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 585 SQTKGGSRRAAWLRRNTLQLRRKR 656
+ + SRRA W R T+ LRR R
Sbjct: 287 HKAR-PSRRATWKRNQTVSLRRYR 309
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.1 bits (67), Expect(2) = 0.004
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 432 FEVILIDPSHKAIRRDPK 485
FE+IL+D +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 26.6 bits (56), Expect(2) = 0.004
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +3
Query: 204 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 335
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 249 RSGTGYVVLPCPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 540 SAGKSSRGLGKGHRFSQTKGGSRRAAW 620
+AGK GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 148 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 258
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 480 PKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAWL 623
P+++ VH+ RG ++AG R G S G SRR AWL
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRR-AWL 310
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 528 RGLTSAGKSSRGLGKGHRFSQTKGGSRRAAWLRRNTLQLRR 650
+ L G+ + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 332 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 171
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 618 RRRDGNLPWFERSDVPCRDHESF 550
R R G++ W E SD+ RDH F
Sbjct: 331 RARRGDIQWLEESDILGRDHYMF 353
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 531 GLTSAGKSSRGLGKGHRFSQTKGGSRRAA 617
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>04_01_0555 +
7152196-7153065,7154805-7154960,7155058-7155130,
7156261-7156367
Length = 401
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 518 SRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHL 637
S A + VR KLSWSR S FP+ + +T+ HL
Sbjct: 272 SLGALASVRNLKLSWSRSMDSHHGEFPNFPTFQKLTTLHL 311
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 317 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 168
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,066
Number of Sequences: 37544
Number of extensions: 387562
Number of successful extensions: 1282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -