Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F17
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 40 7e-05
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 40 7e-05
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 40 7e-05
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 0.38
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 0.67
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 0.89
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 1.2
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 2.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 24 4.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 24 4.7
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 24 4.7
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 24 4.7
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 23 6.3
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 6.3
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 23 6.3
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 23 8.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 23 8.3
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 39.9 bits (89), Expect = 7e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 130 KAFISLPGGKGVRLTIAEERDKRIAAK 210
K++ISLP GKGV+L+I EERD+R A K
Sbjct: 233 KSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 39.9 bits (89), Expect = 7e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 130 KAFISLPGGKGVRLTIAEERDKRIAAK 210
K++ISLP GKGV+L+I EERD+R A K
Sbjct: 233 KSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 39.9 bits (89), Expect = 7e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 130 KAFISLPGGKGVRLTIAEERDKRIAAK 210
K++ISLP GKGV+L+I EERD+R A K
Sbjct: 233 KSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.5 bits (58), Expect = 0.38
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 124 PLPELMNNLVNPVRERGPRGSSLKWQEFER 35
P+P L+ L+N + R + S+ +W+E ER
Sbjct: 90 PVPILLPKLINYLLARKSQKSAAEWEEIER 119
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 0.67
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 26 PGLPFEFLPLQGTSPGPPF 82
P +PF F + GTSP P F
Sbjct: 183 PSVPFGFQHISGTSPSPGF 201
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 0.89
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 128 QRRSSPFPAGRECASPSRKSGTSASQRRSPDSSATY 235
Q++ P PA ASP +KS + ++ RS S T+
Sbjct: 60 QKKKEPSPASSASASPVKKSAEALAE-RSNSSMGTF 94
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 9 RRRKRHPGFLSNSCHFKELPRGP-RSRTG 92
+RR++ GF+ +S KEL GP R R G
Sbjct: 281 KRRRKEGGFVGSSRILKELKDGPSRRRVG 309
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 2.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -3
Query: 133 PLGP--LPELMNNLVNPVRERGP 71
P+GP L +MN + PV ERGP
Sbjct: 132 PVGPGTLGRIMNVIGEPVDERGP 154
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 2 SGTKAQAPPGLPFEFLPLQGTSPGPP 79
S KAQ PP P + P +S PP
Sbjct: 200 SAVKAQPPPPPPQQNYPPAASSSAPP 225
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 23.8 bits (49), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 171 EAHSLPAGKGDERLWALCPN 112
E HS+P KG+ L C N
Sbjct: 51 ETHSIPGSKGEANLIWTCKN 70
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 23.8 bits (49), Expect = 4.7
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +2
Query: 50 PLQGTSPGPPFPNRVNQVVH*FGQRAQRRSSPFPAGRECASPSRKSGTSASQRRSPDSSA 229
P P P P+ + VVH G R +R R C S + S TS S SP SS
Sbjct: 259 PYPDRLPTPLTPSNAHWVVHNEGNRNRRE-------RPCRS-NGSSPTSESALNSPASSV 310
Query: 230 T 232
+
Sbjct: 311 S 311
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 40 RILATSRNFPGAPVPEQG*PSCSLIRAKGPKAFISLPGGK 159
R L R P +PV G P +L+R++ ++ GG+
Sbjct: 13 RRLTGPRAAPSSPVSTNGSPLNNLVRSRLSDGALNFTGGR 52
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 227 RYCPATFAAMRLSRSSAMVRRTPFPPGR 144
++ PA +A + + +RR P PP R
Sbjct: 63 KFAPAKTSAEKKRGAKPQMRRVPIPPHR 90
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.4 bits (48), Expect = 6.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 23 PPGLPFEFLPLQGTSPGPPFPNRVNQVVH 109
P G PF +L SP F N VVH
Sbjct: 1232 PEGSPFSWLRFVDESPQTLFQTFQNPVVH 1260
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 6.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 2 SGTKAQAPPGLPFEFLPLQGTSPGPPFPN 88
S T AP +P P ++P PP P+
Sbjct: 546 SNTTTIAPSPVPTIIAPALPSTPAPPLPS 574
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 28 RASFRILATSRNFPGAPVPEQG 93
RAS IL FP P+ E G
Sbjct: 283 RASLEILRRENTFPADPIQEFG 304
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 158 RECASPSRKSGTSASQRRSPDSSATY 235
+E +SP+ S T + S DSS+TY
Sbjct: 663 KETSSPAYVSSTVSYTSSSVDSSSTY 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,472
Number of Sequences: 5004
Number of extensions: 21520
Number of successful extensions: 76
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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