Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F17
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.31 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   2.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   2.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   6.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    19   8.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    19   8.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.31
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 RSSPFPAGRECASPSRKSGTSAS 202
           ++SP  A R+C SP   SG S S
Sbjct: 581 KTSPNSAVRKCMSPINGSGASGS 603


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 123  GPKGVHLPSRREGSAPH 173
            GP G+ +PS  EG  PH
Sbjct: 1140 GPNGIKMPSFMEG-MPH 1155



 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 47  RIRKEARVALAPSC 6
           R++KE  +  APSC
Sbjct: 357 RVKKEEELQEAPSC 370


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 125 AQRRSSPFPAGRECASPSRKSGTSASQRRSPDSSATYTL 241
           AQ+ +SP P G   +SP + SG+SAS   SP +  T ++
Sbjct: 56  AQQHNSPSPTG---SSP-QHSGSSAS--TSPAARTTSSM 88


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 136 TPLGPLPELMNNLVN--PVRERGP 71
           TP GP+ E +NN  N  P  +R P
Sbjct: 297 TPFGPVTEKVNNDSNSLPFIDRTP 320


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 136 TPLGPLPELMNNLVN--PVRERGP 71
           TP GP+ E +NN  N  P  +R P
Sbjct: 297 TPFGPVTEKVNNDSNSLPFIDRTP 320


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 4   GHEG-ASATRASFRILATSRN 63
           G++G  S+ RA  RIL  SRN
Sbjct: 202 GNDGDESSCRADIRILDLSRN 222


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 47  LPLQGTSPGPPFPNRVN 97
           LP    +P PP PN  N
Sbjct: 409 LPPSAGAPMPPIPNMSN 425


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 137 SSPFPAGRECASPSRKSGTSASQRRS 214
           SS  P G  C   +  +    S+RRS
Sbjct: 147 SSSAPTGSSCGPGAAAAAALLSKRRS 172


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 217 RRPSLRCACP 188
           + P L CACP
Sbjct: 56  KSPLLSCACP 65


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 217 RRPSLRCACP 188
           + P L CACP
Sbjct: 56  KSPLLSCACP 65


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 153 REGSAPHHRGRAGQAHRS 206
           ++GS+PH      Q H S
Sbjct: 624 QDGSSPHFHQSPSQNHSS 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,571
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)