Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F16
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    28   1.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   1.6  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.5  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.6  

>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 283 FFLIIEINYNSLCASLRIAASPWIAREFSYSIIISGNDREAIFSDC 420
           FF I+  +     A  R    P+   +  YSI +SGN + A FS C
Sbjct: 258 FFYIVSPDMAYEVAKRRNIIIPFEDAQTGYSIYLSGNVKNAEFSKC 303


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +2

Query: 14  LLRMKMISNF--QIDPH*DLR-QHVKAFFGV*AVKMVMLNVFHKLAYLTIFVISILQNLL 184
           L     + N+  QI+PH  +  +H+  F  +   +++ L +FH+      FV+S+ + LL
Sbjct: 495 LFEYSAVDNYTLQINPHSSINPEHLNYFRFI--GRVIGLAIFHRRFLDAFFVVSLYKKLL 552

Query: 185 R--VNL-KMESI 211
           R  V+L  MESI
Sbjct: 553 RKKVSLADMESI 564


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 247 ITTAIRVSDMGIFFLIIEINYNSLCASLRIAASPWIARE 363
           I +  +  DM +FF I  +   SL     +A+  W+ +E
Sbjct: 142 ILSGYKYPDMNVFFSIKTLCSKSLAVCFSVASGLWVGKE 180


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 151 G*VSELVEDVQHYHFYSLDTEKRLYMLAEVLMWI 50
           G V +  ED++ +H Y    E+   M  E   WI
Sbjct: 669 GDVLQSDEDIERWHLYDYTKEEEDTMATEAFEWI 702


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 599 TRKTARXCACRVAASGGDRRIDTLQPIVAGAISAFASK 486
           T    R  A ++AA+  D+RI TL P  A ++ + ASK
Sbjct: 527 TSSLIRSLANKLAATKTDQRIPTLTPEHALSVYSKASK 564


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = +1

Query: 181 IEGQSENGEYTQAWQFTTDPGRITTAIRVSDMGIFFLIIEINYNSLCASLRIAASPWIAR 360
           ++ Q  NG   +A  F            + D GI F I   NY    +   I   P++  
Sbjct: 208 LKPQDANGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHINDFPFVEG 267

Query: 361 EFSYSIIISGNDR 399
           +     +IS  DR
Sbjct: 268 QSLLCSVISKEDR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,599
Number of Sequences: 5004
Number of extensions: 47885
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)