Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F16
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 30 1.3
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 30 1.3
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 30 1.7
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 30 1.7
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 30 1.7
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 30 1.7
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889... 29 2.2
06_03_1061 + 27282979-27286854 28 6.7
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 28 6.7
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811... 27 8.9
03_06_0172 - 32133411-32133513,32134174-32134844 27 8.9
03_04_0073 + 17059358-17059921 27 8.9
02_04_0192 + 20795659-20796309 27 8.9
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 584 RXCACRVAASGGDRRIDTLQPIVAGAISA 498
R AC V +S GDRRID +Q GA S+
Sbjct: 240 RNIACIVVSSSGDRRIDQMQKGGGGASSS 268
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 22 DEDDLQLSNRSTLRPPPACKGVFRCLSCKNGNAERLPQARLLNHLRYF 165
D DD NRS + P G+++C C++GN + LRYF
Sbjct: 25 DSDD----NRSDPQEPSRNPGIWQCTICEHGNDAKKKSCEQCGVLRYF 68
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 400 EAIFSDCVWSVRSCDGTLKKRGH 468
E++ +WS R DGT+K RGH
Sbjct: 329 ESVHFSAMWSGRLADGTIKTRGH 351
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 202 GEYTQAWQFTTDPGRITTAIRVSDMGIFFLIIEINYNSLCASLRIAASPW-IAREFSYSI 378
G +AWQ + T + +GI F +N A + + + W ++ F Y+
Sbjct: 66 GYANEAWQVALPAEEVPTELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAA 125
Query: 379 IISGNDREAIF 411
++ NDR+ +F
Sbjct: 126 RLNRNDRKRLF 136
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 31 DLQLSNRSTLRPPPACKGVFRCLSCKNGNAERLPQARLLNHLRYFHSPELIEGQSENGEY 210
D +L+ R+ PA + +FR + C+ N R + L + HSP+LI G SE G
Sbjct: 225 DTRLNYRAIDLRTPANQAIFR-IQCQVENKFR--EYFLSKNFVGIHSPKLIAGSSEGGAA 281
Query: 211 TQAWQFTTDP 240
Q+ P
Sbjct: 282 VFKLQYNGQP 291
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 424 WSVRSCDGTLKKRGHCLSVEGLDANALIAPATIGCKVSIRRSPPEAATLQAQXRAVLRVA 603
W + +CDG + KR L L+ A A + S PPEA + + +A+LR+
Sbjct: 10 WEICNCDGFVYKRRRVLHPPDLEDAAATAATS-----SAPGPPPEAVLRRRRRQALLRLR 64
Query: 604 SR 609
+R
Sbjct: 65 AR 66
>09_04_0702 -
19587943-19588168,19588423-19588525,19588809-19588923,
19589061-19589086,19589178-19589398,19589493-19589608,
19589695-19589953,19590052-19590139,19590236-19590307,
19590401-19590476,19590746-19590809,19591139-19591259,
19592391-19592451,19592682-19592828
Length = 564
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Frame = +1
Query: 64 PPPACKGVFRCLSCKNGNAERLPQARLLNHLRYFHSPELIEGQSENGEYTQAWQF----- 228
PP C F LSC NGN+ P + +HL HS + E + TQ Q
Sbjct: 251 PPRRCSFPFGVLSCDNGNSTTEPYI-VAHHLLLAHS-SAVSLYREKYQATQGGQIGLTLL 308
Query: 229 -------TTDPGRITTAIRVSDMGI 282
T DP + A R++D I
Sbjct: 309 GWWYEPGTQDPEDVAAAARMNDFHI 333
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 473 KQCPRFFRVPSHDLTDHTQSEKIASRSF 390
++ P+F RVPS D T T KI + F
Sbjct: 299 QETPKFHRVPSLDATQRTLLRKIEGKRF 326
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 472 NNVHAFSESRRTI*QTIRNQKK*LHDRFQILLWSKRTHE-LSKVMQLFLTKHIENYS*FQ 296
++VH E+ + Q +++Q+K + + LWSK E + K++ + H+E ++ F
Sbjct: 307 SSVHQRGENLNILKQEVKSQRKHVKSLQKKSLWSKNLEEVMEKLVDIVHFLHLEIHNAFG 366
Query: 295 LSE 287
S+
Sbjct: 367 RSD 369
>06_01_1034 +
8110347-8110943,8111201-8111512,8111841-8112011,
8112780-8114576
Length = 958
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 133 VEDVQHYHFYSLDTEKRLYMLAEVLMW 53
VED+ Y FYS+ +KR+ L + W
Sbjct: 479 VEDIPLYDFYSVKADKRVEQLEVLKSW 505
>03_06_0172 - 32133411-32133513,32134174-32134844
Length = 257
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 127 DVQHYHFYSLDTEKRLYMLAEVLM 56
DV H HF+ ++++ LYM++ V++
Sbjct: 203 DVDHAHFFLVESQGELYMVSLVIL 226
>03_04_0073 + 17059358-17059921
Length = 187
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -3
Query: 611 PRLATRKTAR----XCACRVAASGGDRRIDTLQPIVAGAISAFASK 486
P LATR AR AC +S DR D L + AGA + ++
Sbjct: 58 PCLATRWAARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVAR 103
>02_04_0192 + 20795659-20796309
Length = 216
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 122 SALPFLQLRHRKTPLHAGGGLNVDRFESWRSSSSAVVV 9
+A P + R R P AGGG + F S SSSS+ V
Sbjct: 16 TATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFV 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,757
Number of Sequences: 37544
Number of extensions: 316799
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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