Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F15
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1171 - 31455136-31455482,31455805-31458982                       33   0.14 
04_04_1303 - 32487174-32487871,32488583-32489123                       30   1.3  
04_04_1301 - 32479307-32479837                                         27   9.4  

>04_04_1171 - 31455136-31455482,31455805-31458982
          Length = 1174

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 423  KTFSETSL*SATNSLTEGSNVAKSNLSSVRRLSTTCDLGKPVVFSIKAIGLLP*AYKSSP 244
            + FS   L +ATNS  +G+ +  SNLS+V +     D    +V ++K + L     KS  
Sbjct: 853  RRFSYGQLAAATNSFDQGNVIGSSNLSTVYKGVLAGDADGGMVVAVKRLNLEQFPSKSDK 912

Query: 243  TFCT 232
             F T
Sbjct: 913  CFLT 916


>04_04_1303 - 32487174-32487871,32488583-32489123
          Length = 412

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 284 LILKTTGL-PRSQVVDSLRTLLKFDLATFEPSVNELV 391
           L  +  GL P   VVDSLR+ L   LATF P   +LV
Sbjct: 15  LFYEAAGLTPFDSVVDSLRSSLGATLATFAPLAGKLV 51


>04_04_1301 - 32479307-32479837
          Length = 176

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 308 PRSQVVDSLRTLLKFDLATFEPSVNELV 391
           P   +VDSLR+ L   LATF P    LV
Sbjct: 58  PFDGIVDSLRSSLGATLATFAPLAGRLV 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,504
Number of Sequences: 37544
Number of extensions: 225740
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)