Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F15
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    28   4.8  

>Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical
           protein Y57G11B.2 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 274 TYCFDTEDNRLTEITGCGQSTDT 342
           TYCF++ ++ LTE+T   QS  T
Sbjct: 47  TYCFESYNSNLTEVTASCQSMGT 69


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 317 QVVDSLRTLLKFD-LATFEPSVNELVADYKLVSENVLLLIRYPRYLLQIKSKY 472
           Q+V  L   LK D  +   P+V EL++DY L  E  + L R P +  +I   Y
Sbjct: 760 QLVSFLSVYLKNDDFSKRVPTVRELLSDYSLGMEATMCLAR-PIFFSRISDHY 811


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,835
Number of Sequences: 27780
Number of extensions: 236475
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)