Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F14
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 81 2e-16
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 79 4e-16
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.0
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 3.5
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 3.5
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 26 3.5
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 26 4.6
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 4.6
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 8.0
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 138
AIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF+ +
Sbjct: 141 AIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS 183
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 79.4 bits (187), Expect = 4e-16
Identities = 33/43 (76%), Positives = 38/43 (88%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 138
AIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR++ +
Sbjct: 141 AIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS 183
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 407 EIQKVTWDSFVLRKSHGNYAGKTAESS 327
+++K+ WD FV K +G G E S
Sbjct: 1226 KVRKILWDDFVSSKRNGKNGGSFIEES 1252
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 226 NAESIVLFIACDAVARCCDVTRRR--DGNLPWFERSDV 119
N IVLF AV +CCD+ R GNL ++ D+
Sbjct: 153 NTTDIVLFPFVLAVIKCCDIVHREFLMGNL--YDEEDI 188
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 137 PREVPVAPPGYVATPCNCVASDKQ 208
P PV P GY T CV+S Q
Sbjct: 259 PESYPVPPSGYPLTSSTCVSSISQ 282
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +2
Query: 95 KALVVSARDIASLKPREVPVAPPGYVATPCNCVASDKQDNGFRIDFLFVSVFIFKWK--- 265
+A V S+ A+L+ E+ G + T + + +DNG +I + +W+
Sbjct: 22 EAAVYSSGVAAALRSMELKGKTIGVMITASH---NPVEDNGVKIIDADGGMLAMEWEDKC 78
Query: 266 ---ADVPNKIYFYLYYTKFLFQTSCSPR 340
A+ P+K F +FL T+C P+
Sbjct: 79 TQLANAPSKAEFDFLIKQFLTPTTCQPK 106
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 395 VTWDSFVLRKSHGNY 351
+TWDSFVL GNY
Sbjct: 157 MTWDSFVLANVVGNY 171
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 284 IYFYLYYTKFLFQTSCSPRFYPRSSREIFVIQNYPMSLSGFQTIFISKLV 433
+ F+ YTKFLF++ S + ++ + LS F+T+ + KL+
Sbjct: 805 LLFFEAYTKFLFESPDQGEKVKSLSAAVLIL--FENKLSEFRTLALEKLL 852
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 275 PNKIYFYLYYTKFLFQTSCSPRFY 346
PNK Y+Y F + CSP +
Sbjct: 74 PNKFSIYIYIYFFFYSFLCSPYLF 97
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 135 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANS 10
L E + T+ FPC T+HL + + + + +I N+
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNN 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,520
Number of Sequences: 5004
Number of extensions: 46776
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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