Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F14
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    73   1e-13
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    73   1e-13
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715...    30   1.2  
01_01_0652 + 4975091-4975585                                           30   1.5  
08_02_0669 + 19868149-19870179                                         28   4.7  
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735...    28   4.7  
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729...    28   6.2  
06_01_1010 + 7866158-7866661                                           27   8.2  
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     27   8.2  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
           A  AIR DP+INW+   VHKHRE+RGLTSAGK  RGL GKGH   + +  SRRA W
Sbjct: 243 AHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 297


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
           A  AIR DP+INW+   VHKHRE+RGLTSAGK  RGL GKGH   + +  SRRA W
Sbjct: 138 AHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 192


>04_01_0555 +
           7152196-7153065,7154805-7154960,7155058-7155130,
           7156261-7156367
          Length = 401

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 63  SRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAIN 206
           S  A + VR  KLSWSR   S       FP+ + +T+ HL   +  +N
Sbjct: 272 SLGALASVRNLKLSWSRSMDSHHGEFPNFPTFQKLTTLHLYKCNMCLN 319


>01_01_0652 + 4975091-4975585
          Length = 164

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  SAGKSSRGLGKGHRFSQTKGGSRRAAW 165
           +AGK     GKG R  + +GG RR  W
Sbjct: 37  AAGKRREAAGKGGRQREARGGGRRMRW 63


>08_02_0669 + 19868149-19870179
          Length = 676

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   ARGAIRRDPKINWIVNAVHKHREMR 75
           A G  +   K  W+VN +H+H E R
Sbjct: 636 ADGGAQGSKKARWLVNEIHRHYEQR 660


>07_01_0886 -
           7356591-7356662,7357002-7357079,7357373-7357444,
           7357511-7357600,7357669-7357783,7358509-7358639,
           7358717-7358992,7360147-7360283,7360368-7360502,
           7360958-7361325,7362111-7362229,7362295-7362339
          Length = 545

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 163 RRRDGNLPWFERSDVPCRDHESF 95
           R R G++ W E SD+  RDH  F
Sbjct: 331 RARRGDIQWLEESDILGRDHYMF 353


>09_02_0328 -
           7293547-7293855,7294161-7294274,7294348-7294429,
           7295318-7295401,7296199-7296399,7296516-7296853,
           7296968-7297084
          Length = 414

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 76  GLTSAGKSSRGLGKGHRFSQTKGGSRRAA 162
           G++ +G    G G+G      KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202


>06_01_1010 + 7866158-7866661
          Length = 167

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 64  REMRGLTSAGKSSRGLGKGHRFSQTKGGSRR 156
           R+  G+   G  + G GKG R+    GG RR
Sbjct: 57  RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87


>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  PKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRA 159
           P+++     VH+    RG ++AG   R  G     S   G SRRA
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRA 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,405
Number of Sequences: 37544
Number of extensions: 310401
Number of successful extensions: 992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)