Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F14
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    80   1e-15
Z77656-4|CAH04701.1|  536|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024843-11|AAL00870.1|  177|Caenorhabditis elegans Hypothetical...    29   2.4  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    28   4.2  
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    28   5.5  
Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical p...    27   7.3  
U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 35/52 (67%), Positives = 39/52 (75%)
 Frame = +1

Query: 10  AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAW 165
           AIRR+P   WI   VHKHRE RGLTSAG+ SRGLGKG RFS T+GGS+   W
Sbjct: 141 AIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNW 192


>Z77656-4|CAH04701.1|  536|Caenorhabditis elegans Hypothetical
           protein F07B10.5 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = -1

Query: 481 IVALYCFTMDTGMLRMYQFGDEDSLKSRK*HGIVLYYENLTGTTRVKPRRAASLK*KFSI 302
           ++  Y ++ D    +    GD++ +K        L   +L+G    KP      K ++S 
Sbjct: 207 VIGSYAYSSDEVQYKWRIMGDDNGVKIDYESIADLPQFSLSGFKVYKPANITRDK-EYSA 265

Query: 301 VQVKIYFIRHIGF 263
           ++V+ YF RH G+
Sbjct: 266 LEVRFYFDRHFGY 278


>AC024843-11|AAL00870.1|  177|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.11 protein.
          Length = 177

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 138 QGRFPSRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNGKPMCLIKYIFTCTILNFY 317
           QGRF    L+T+  L+     ++ T DS L    + S+  N + + L + +  C  + +Y
Sbjct: 42  QGRFLIAGLITAPFLSRLETHLSGTTDSELKNRCY-SIRCNAETLSLDRAVLVCGFIGWY 100

Query: 318 FK 323
           ++
Sbjct: 101 WR 102


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 250 KDRNE*KVNAESIVLFIACDAVARCCDVTRRRDGNL 143
           K+R+E K   +S+V  +    V    D  R RDGN+
Sbjct: 76  KERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNV 111


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 175 CDVTRRRDGNLPWF 134
           C++  +RDGN PWF
Sbjct: 350 CEILTKRDGNRPWF 363


>Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical
           protein M01B2.2 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 218 FRIDFLFVSVFIF--KWKADVPNKIYFYLYYTKFLFQTSCSPRFY 346
           F   F+F+ VF+F   +   +  KI  YL    F+F   CSP  Y
Sbjct: 230 FLPSFIFLGVFVFVGMFTQLIDPKISQYLVSVIFMFSPICSPFSY 274


>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 218 FRIDFLFVSVFIFKWKADVPNKIYFYLYYTKFLFQTSCSPRFYPRS 355
           F  D+  V  F+  W A    K YFYL+   + +QT     FY  S
Sbjct: 150 FFTDWTIVIQFLESWIAQGATKFYFYLH--SYTWQTKKVLDFYKES 193


>Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 218 FRIDFLFVSVFIF--KWKADVPNKIYFYLYYTKFLFQTSCSPRFY 346
           F   F+F+ VF+F   +   +  KI  YL    F+F   CSP  Y
Sbjct: 230 FLPSFIFLGVFVFVGMFTQLIDPKISQYLVSVFFMFSPICSPFSY 274


>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 218 FRIDFLFVSVFIFKWKADVPNKIYFYLYYTKFLFQTSCSPRFYPRS 355
           F  D+  +  F   W A    K YFYL+   + +QT     FY +S
Sbjct: 200 FFTDWTVIIQFFESWIAQGATKFYFYLH--SYTWQTKKVLNFYKQS 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,842
Number of Sequences: 27780
Number of extensions: 271776
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)