Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F13
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    27   1.3  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   3.1  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   4.1  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   4.1  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   7.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   7.1  

>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 447 ILFHIWWFIFDLDIGCSCHFDNIPSVHIFKLLFTTENLFFKN 322
           IL+H      DLDIGC    D + S   F +L +TE + + N
Sbjct: 140 ILYHYGGVYMDLDIGCKKPMDPLLSKATF-ILPSTEPIGYSN 180


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
 Frame = -2

Query: 501 FHMKIITIHVFFMYVLLGILFHIW----WFIF-DLDIGCSC----------HFDNIPSVH 367
           +H K I        V +G+   +W    WF+F    +G  C          +F+N P+  
Sbjct: 161 YHFKFIVFRWMEWLVFVGLRGLVWSVPLWFLFWPATVGILCAPGRHEGNDYYFNNYPAPQ 220

Query: 366 IFKLLF 349
           +FKL+F
Sbjct: 221 VFKLIF 226


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 CCHSEGSFKYLSSSYKSGNEEVYSDMLRFTLDI 237
           C   + S  ++ SS+K    ++Y+DML+  +D+
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDL 563


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 150 GMTAPAKIVFEFPFIVRHFIKSNEV 76
           G+TA  K    FP +  H +KSNE+
Sbjct: 526 GVTATNKTQSSFPSVYEHQLKSNEL 550


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 71  HKTSFDLIKCLTMNGNSKTIFAGAVIPKDRLNIYPV 178
           ++ S  L+ CLTM   S T  +GAVI      + PV
Sbjct: 139 YQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPV 174


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 314 RQQFLKNR-FSVVKR---SLKICTLGILSKWQLQPMSRSKMNHQM 436
           R  +LK+R FS V+R    L  C+L  LSK +L  + R ++ H++
Sbjct: 55  RGAYLKDRTFSNVQRLSKPLMECSLEELSKLELDEVQRDEIEHEV 99


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 274 LLCTMGLVQALNEYLR*ILTYRCKLL 197
           +LC  G+ QALN + R + T + KLL
Sbjct: 64  MLCLEGIAQALNVFNRRMATPQYKLL 89


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 71  HKTSFDLIKCLTMNGNSK 124
           H+ S DL+K L MNG SK
Sbjct: 214 HQKSLDLLKGLEMNGFSK 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,630
Number of Sequences: 5004
Number of extensions: 34402
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)