Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F13
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468...    28   4.1  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     28   5.4  
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    27   7.2  
09_04_0384 - 17153064-17154233                                         27   9.5  
04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147     27   9.5  
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389...    27   9.5  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    27   9.5  

>09_06_0347 +
           22445962-22446154,22446495-22446616,22446764-22446885,
           22447405-22447594,22447874-22448014,22448257-22448724,
           22448842-22449609,22450185-22450373
          Length = 730

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 94  KMSYDEWKLEDDLCRCCHSEGSFKYLSSSYK-SGNEEVYSDMLRF 225
           +M  DE+K    L R  H +G+F Y+   Y  SG+    SD+  F
Sbjct: 514 RMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSF 558


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 459 VLLGILFHIWWFIFDLDIGCSCHFDNIPSVHIF 361
           V +G L  ++++ FD+D+  S     + SVH+F
Sbjct: 7   VWVGTLQRVYFYAFDIDLASSTLVTGMLSVHVF 39


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 73  QDFI*FNKMSYDEWKLEDDLCRCCHSEGSFKYLSSSYKSGNEEVYSD 213
           +D +    M  D++K+  ++C    + GS + L      G +E YS+
Sbjct: 495 KDIVVLPSMDKDQYKVRTNICSLPEAIGSLQSLQILNLQGTDEAYSE 541


>09_04_0384 - 17153064-17154233
          Length = 389

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 235 IHLAPVLGPLCTATYTICEPCILKLKEATIFKKQVLRCEEKFKDMYTR 378
           I  AP+L PL    Y  C PC+       I   +VL C       +TR
Sbjct: 147 IRRAPLLVPLFDRCYLPCRPCLAGNPVFFITDDRVLCCGLDILHFFTR 194


>04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147
          Length = 239

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 280 TICEPCILKLK--EATIFKKQVLRCEEKFK-DMYTRNIIKVAAAADVEIKDEPPDVKENA 450
           TI E  I  +K  +  I K ++L+ E +    + T      AA+AD  ++  PP  +EN 
Sbjct: 33  TIVEATINYIKNLQDKIHKMEMLKVEREHAIALATAATATAAASADTALQAPPPSEEENE 92

Query: 451 QQD 459
           + D
Sbjct: 93  EHD 95


>04_03_0744 +
           19237901-19237912,19238119-19238611,19238860-19238928,
           19239124-19239140,19239260-19239357,19240019-19240156,
           19240710-19240899,19241175-19241307,19241505-19242442
          Length = 695

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 474 VFFMYVLLGILFHIWWFIFDLDIGCSCHFDNIPS--VHIFKLLF 349
           V +M +  G  F  W+F     +G SC FDN PS  +  FK  F
Sbjct: 237 VKYMSLSFGWSFFKWFFS---GVGDSCGFDNFPSFGIEAFKNTF 277


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 141 APAKIVFEFPFIVRHFIKSNEVLCYL 64
           A  KI+F  P I +HF + N+VL Y+
Sbjct: 268 ASPKILFSTPRIKQHFRQYNQVLIYM 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,051
Number of Sequences: 37544
Number of extensions: 193325
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)