Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F12
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0399 - 9825365-9825912,9826019-9826190,9826325-9826442,982...    29   1.6  
02_04_0658 - 24793219-24794109                                         28   3.7  
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313...    27   8.6  

>02_02_0399 -
           9825365-9825912,9826019-9826190,9826325-9826442,
           9826612-9826878,9826992-9827062,9827163-9827791,
           9827898-9828053,9828150-9828210
          Length = 673

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 89  HAGVLAVVVFFSAGFDGPDPDFSGCFLP 6
           HA    + V FSAG DGP P   G  LP
Sbjct: 228 HAVARGIPVVFSAGNDGPTPQTVGSTLP 255


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 502 SEMHCSANLTHSIAMFTFNYL-PLCFKSFSNRFHQLFFLSL 383
           S +H  A +  S+ +F F  L   C K FS R H LF  +L
Sbjct: 197 SRLHVFAIMLFSLQIFLFVPLVAFCIKKFSLRLHLLFSFAL 237


>03_01_0403 -
           3133568-3134440,3135131-3135494,3136341-3136408,
           3137184-3137857,3138093-3138105
          Length = 663

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 110 STQP*ELHAGVLAVVVFFSAGFDGPD 33
           ST+    HA  L V   FSAG DGPD
Sbjct: 168 STEIGAFHAMQLGVPAVFSAGNDGPD 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,703,101
Number of Sequences: 37544
Number of extensions: 106849
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)