Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F12
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    37   0.007
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    34   0.051
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    29   1.9  
U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 419 KALKAQRKVVKGEHGNRVRKIRTTVHFR 502
           KAL A++KVVKG+     R++RT+VHFR
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFR 38


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +2

Query: 413 VTKALKAQRKVVKGEHGNRVRKIRTTVHFR 502
           V KA++A++ VVKG   N  + +RT+VHFR
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFR 37


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 468 LLPCS--PLTTFLCALRALVTGFTSCFFCPLMPVFLGLGAIFNFVATGLGFEDLAVDAAF 295
           L+ CS  PL  +    RA      +C    L+PV  G+  I    ATGL F+ + V   F
Sbjct: 229 LMVCSLRPLMIYFRYRRAESKPLEACLGA-LIPVLSGITTIGMVSATGLAFQSIIVSTLF 287

Query: 294 L 292
           L
Sbjct: 288 L 288


>U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical
           protein F07C4.10 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 103 CVDICSQTIISQDPSASS*SCFN*GCTCFGTSC*EKGNIC 222
           C  I  +TII+QD  AS   C   GC    T C    +IC
Sbjct: 137 CNSIAWRTIIAQDCPASCGFCNMGGCVDAVTDCANDVSIC 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,154
Number of Sequences: 27780
Number of extensions: 96604
Number of successful extensions: 226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)