Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F11
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...   101   6e-23
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.013
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.1  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.0  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.5  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   3.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   4.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.6  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    26   4.6  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.6  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   6.1  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   6.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.1  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   8.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.0  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score =  101 bits (243), Expect = 6e-23
 Identities = 56/140 (40%), Positives = 82/140 (58%)
 Frame = +3

Query: 81  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 260
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + ++D+FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60

Query: 261 ECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 440
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 441 KYIQATDLSEASQEAVEEKL 500
             IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 27/86 (31%), Positives = 43/86 (50%)
 Frame = +3

Query: 147 RYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYGLFDFEYTHQCQGTS*AS 326
           R  +  I +E   DV+T+  ++   +S   D +K    EC  G  +  +          S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVLVYDD----S 76

Query: 327 KKQKLFLMSWCPDTAKVKKKMLYSSS 404
           KK  L L+S+ P+ A V++KMLY+SS
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 336 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 488
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 401 ARVQHLLLDLGGVWAPRH*EQFLFLARLRCTLALMRVFKIEE 276
           A ++ LLL +     PR  ++ +   R+ CT  L  VF++EE
Sbjct: 93  ASLEELLLKIFN--GPRSDKELILTIRIMCTFCLASVFQVEE 132


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 402 SFDALKKSLVGVQKYIQATDLSEASQ 479
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 108 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYGLFDF 287
           K + + ++ + K ++     +D K+ D + +  +  EY SF ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 288 E 290
           +
Sbjct: 167 Q 167


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 182  LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 39
            +F++A + +   +F+IL    FF+ R+  V Y  T R    L  V  +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 DASERSVACMYFCTPTRDFFSASKELEY 392
           D+ + S  C + C  T+DF S S  + +
Sbjct: 189 DSGDDSFKCSFLCGDTKDFVSCSNNVPF 216


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -3

Query: 245 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 66
           +QV EK +V G      F   L       H + +FL+   ++ CR  SVR     R  L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329

Query: 65  LKHVKIAP---LILTTPRQQRP 9
             + + AP    +L+  +Q RP
Sbjct: 330 --YERSAPKNQCLLSDWKQVRP 349


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 87  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 209
           VT  D  KT  +  +K  KH+ V  YIR  K +D   +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 74  FLMLKHVKIAPLILTTPRQQR 12
           FL  KHVK+A ++L   RQ+R
Sbjct: 139 FLEPKHVKLAGIVLLLDRQER 159


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 508 LTVSESDAFSSPLRSRLKHTLRT 576
           L + E+ AFS  LRSRLK+   T
Sbjct: 650 LPLQEASAFSEDLRSRLKYIRET 672


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 292 YSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTVSTS 185
           Y+KS++ ++ S   P C + + LS S++   T +T+
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSILFSTTNTT 324


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 121 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 249
           K+ + + N+A    TFA      SKP+  V+P++  F+ T  R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 355 HDIRNNFCFLLAYDVPWH*CVYSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTV 194
           HD+ ++  +++     +H C  ++S  P  HS  PP            LRPP V
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFP--HSHHPPLHNPLPVSCQPVLRPPPV 158


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 90  TVSDACKTTYEEIKKDKKHRYV 155
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 422  FLQRIEGARVQHLL 381
            F+QRI G R++HLL
Sbjct: 1202 FVQRIRGGRIRHLL 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,678
Number of Sequences: 5004
Number of extensions: 41272
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)