Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F11
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.      106   1e-23
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...   106   1e-23
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       80   1e-15
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    80   1e-15
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    78   5e-15
AF003388-2|AAB54267.2|  167|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    27   9.6  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score =  106 bits (255), Expect = 1e-23
 Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
 Frame = +3

Query: 75  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 248
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 249 -GGTGECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 425
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 426 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 515
           L G++    +QA+++S+  +++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score =  106 bits (255), Expect = 1e-23
 Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
 Frame = +3

Query: 75  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 248
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 249 -GGTGECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 425
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 426 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 515
           L G++    +QA+++S+  +++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
 Frame = +3

Query: 75  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 209
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 210 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKK 383
            A +D F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 384 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 500
           KM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
 Frame = +3

Query: 75  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 209
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 210 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKK 383
            A +D F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 384 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 500
           KM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
 Frame = +3

Query: 75  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 209
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 210 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTS*ASKKQKLFLMSWCPDTAKVKK 383
            A +D F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 384 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 482
           KM+Y+SS  A+K SL  G     Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
 Frame = +3

Query: 345 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 515
           L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  +++V+  L +  R
Sbjct: 154 LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 211


>AF003388-2|AAB54267.2|  167|Caenorhabditis elegans Hypothetical
           protein R10F2.4 protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 124 K*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENA 267
           K KR  +  +  +T   R RS S+P     P T A  +    A P+ A
Sbjct: 107 KVKRSESAGSSTTTTKPRTRSGSRPGTSSRPGTNASERATSAAGPKRA 154


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 339 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 497
           + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E +E K
Sbjct: 86  MLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDELLESK 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,242
Number of Sequences: 27780
Number of extensions: 244438
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)