Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F10
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    36   0.006
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    32   0.054
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    30   0.29 
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    28   0.88 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.5  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   2.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   2.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   3.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   4.7  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   6.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.2  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   8.2  

>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = +1

Query: 421 DSSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAILINPQSALFFAKR 582
           DS+  V  EE   +++ + E   A +   Y +A+ LYT+AI I+P S ++++ R
Sbjct: 73  DSTAHVNKEE---AEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNR 123


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 421 DSSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAILINPQSAL 567
           ++  E   E  + ++++++     + E +Y EAIK YTEAI +   SAL
Sbjct: 10  NAGTESQQEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSAL 58


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 88  PIFIMSCPFNEEQLTQLKLFVELCKTQPQILHHPKLV---FFKEYLGSLGVTIPTAT 249
           P F+MSC F  + L Q+ L+ +       +   PK +     + +LG LGV + T T
Sbjct: 355 PSFVMSCSFTNQVLAQIALWTDNTSYPLGVHMLPKKLDEEVARLHLGKLGVKLTTLT 411


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +1

Query: 421 DSSKEVTDEER----DQSDEKRSEAMRAFSEHQYNEAIKLYTEAILINPQSALFFAKR 582
           + SKE+ D E     D+++E R +    F    +  AIK YTE     P     F  R
Sbjct: 382 EKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNR 439


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 364  LDMDGVIEADSLDSNQLMGDSSKEVTDEERD 456
            ++++G+ E +SL+ NQL GD       E+ D
Sbjct: 1273 VELNGLFEENSLNFNQLRGDEKTLAISEKND 1303


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 364 LDMDGVIEADSLDSNQLMGDSSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIK 525
           ++MD VIE     S++L     +    E++++ D+K  ++ R   E +  E+ K
Sbjct: 445 VEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPK 498


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 373 DGVIEADSLDSNQLMGDSSKEVTDEERDQSDEKRSEAMRAFSEHQYN 513
           D   E D L+ N     S KEV+ ++  QSDEK  E  + F++  ++
Sbjct: 19  DSSSEEDKLEKNIQDETSIKEVSLQDAKQSDEKGVEE-KVFNDESFS 64


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 42  NFLSFVCVLGLPVLNPYFHNELSFQRRTINAI--KIIRG 152
           N+++   V+GL   NPY    L FQR   N    K+++G
Sbjct: 335 NYVTVGLVVGLDYPNPYVSPALEFQRMKQNPFFAKVLKG 373


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 173 RFYIIQNWYSSKNILDRLGSQYPLLHLVLKASHLP--ETATLLLTMLRVNHRN 325
           R   +++W+ S ++ DRL +   LLH      HLP  E +TLL + L  +  N
Sbjct: 108 RLKTLESWFQSLSLQDRLTTLRTLLH------HLPSQEISTLLSSSLTSSPSN 154


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 493 FSEHQYNEAIKLYTEAILINPQ 558
           +++  Y  A+KLY  A++ NPQ
Sbjct: 186 YAKGNYRSALKLYQRALVSNPQ 207


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 132 AIKIIRGIMQNSTSDFTSSKIGILQRISW 218
           A KI+   M     DF  ++I IL+R+S+
Sbjct: 58  AAKIMNKKMMEKKQDFVKNEIAILKRVSY 86


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 97  IMSCPFNEEQL----TQLKLFVELCKTQPQILHHPKLVF 201
           I+ C  NEE +     QLKL + LC+  P +  + K  F
Sbjct: 97  IIKCICNEEHVGIESVQLKLILLLCQNLPNVTTNAKKYF 135


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +2

Query: 431 RKLPMRNEISLMRNVQKL*EHSPSI 505
           +KLP++   S++R++++L E +PS+
Sbjct: 177 KKLPLKFAYSILRDLKELLEKTPSL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,594
Number of Sequences: 5004
Number of extensions: 42186
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)