Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F06
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 1.9
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 29 1.9
05_03_0102 + 8414109-8414505,8416172-8416227 29 2.5
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 2.5
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 29 2.5
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 28 3.3
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 28 4.4
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 5.8
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 5.8
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 27 5.8
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 5.8
07_03_1533 + 27523811-27524710 27 7.7
06_03_0615 - 22761375-22761760,22762218-22765026 27 7.7
06_01_0768 + 5742938-5743196,5743291-5744729 27 7.7
04_01_0180 + 2034021-2034023,2034741-2035088 27 7.7
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 27 7.7
01_06_0479 + 29631435-29631608,29632769-29632864,29633065-296331... 27 7.7
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 307 ALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHEKLQTA 450
A+ DA G+ ++ ++ L+ E L A+PDVE + L E L+ A
Sbjct: 515 AIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEA 562
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 253 CSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALH 432
CS ++ ++ + A T + EV L VE+LR+ HPDV T L
Sbjct: 169 CSPPVLVTFADAGAAEYDASTGCLREPNEVATLHNSLLLDAVEELREKHPDVAIMHTDLF 228
Query: 433 EKLQTAIQN 459
+ +QN
Sbjct: 229 RHVSEMVQN 237
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 259 DSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVE 411
D++ + ELS + + D + ++Q RQN+ + +E L + PDVE
Sbjct: 41 DTLEGRTDELSQKFEKTIQDFEVQVNNNMEQLRQNIVQDLEHLLR--PDVE 89
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +3
Query: 336 GSAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANR 449
GSA +SSP +RGS G+P RR R EAA R
Sbjct: 27 GSAASSSPRWLPRARGSTVGSPPRRGGEER-GGEAATR 63
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 405 VGVRLAEILDCALQVLASLLEHFLSFTVCVGQ 310
+GV +A + D L +L S+L T CVGQ
Sbjct: 135 LGVGIASVTDLKLNLLGSVLSGLAIATTCVGQ 166
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 335 LALPFASVNAPCRLLDNSETCCTMESEHFLQ 243
+ LP + NAP R L +S + ++E HFLQ
Sbjct: 924 IPLPDQTRNAPLRKLSSSGSINSLEESHFLQ 954
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 280 SELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHEKLQTAIQN 459
S LS+ L DAN K+ +Q+ ++ + + + D++K HE + A +
Sbjct: 795 SSLSSESFDILRDANELLKQEVQKLKEEVNSLRQQREQQDADLQKSEAKAHEAMTLASEE 854
Query: 460 TLK 468
K
Sbjct: 855 ASK 857
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 209 QLKEHGELEQSTEGSAPTPWCSRSPSYPTVYRVR*PTQTVKLRKCSNKLARTWSAQSRIS 388
Q+ G Q+T AP + S P + ++ K R+ + AR ++Q +
Sbjct: 22 QVANSGSSLQTTASPAPADYEQEVSSAPQGGFIPVLSKAAKRRRRAAAKARQAASQEHVI 81
Query: 389 ARRTPTSRNK-PPHYTRSCKPPSR 457
R TS + PP +TR+ +R
Sbjct: 82 KVREATSNDSMPPRFTRAAPAMTR 105
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 336 GSAPTSSPELGAHSRGSPQGA--PRRRETSHRI 428
GS+ ++SP A +RG+P GA PR R+ + +
Sbjct: 208 GSSASTSPRTPATARGAPAGAAWPRHRDRTQAL 240
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 472 SPLVCSGWRFAASRVMRWLVSRRRGAPCGDPRLCAPSSGELV 347
SP WR A R + S R P DP+LC S G +V
Sbjct: 476 SPPPVPPWRAAIPRNKAEMTSGSRPLPWLDPQLCQGSGGVVV 517
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 368 SAQSRISARRTPTSRNKPPHYTRSCKPPSR 457
SA+ + RR P+ R KP R PP+R
Sbjct: 1000 SAEKDVQQRREPSPRRKPASPPRKRTPPNR 1029
>07_03_1533 + 27523811-27524710
Length = 299
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 366 GAHSRGSPQGAPRRRETSHRITREAANRHPEH 461
G H+RGS RRR R +R RH H
Sbjct: 158 GNHTRGSGGVVVRRRHRRRRRSRRRRRRHRHH 189
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 GAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTE-SLNKALKEV 254
GA+ A T+L+ L+ H F I QF ++N + + S+NK E+
Sbjct: 494 GALPGELANITVLELLDVHNNSFTGAIPPQFGELMNLEQLDLSMNKLTGEI 544
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 272 SRSPSYPTVYRVR*PTQTVKLRKCSNKLARTWSAQSRISARRTPTS 409
+RSP V R+R Q R+C A W A R+ +RR T+
Sbjct: 121 ARSPCRHLVKRLR--EQEALQRRCGPGTAAYWRAAERLGSRRNGTA 164
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 337 EVLQQARQNLERTVEDLRKAHPDVEKQATALHEK 438
E L++ QNL R E+ +K H +++K+ L K
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERK 85
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 451 WRFAASRVMRWLVSRRRGAPCGDPRLCAPSSGELVGALP*LYR 323
+R A+ + +S R P P P+SG L G LP LY+
Sbjct: 557 YRLLAAPIEAVPISYRPAEPIQQPHGSFPNSGPLPGFLPKLYK 599
>01_06_0479 +
29631435-29631608,29632769-29632864,29633065-29633106,
29633220-29633306,29635246-29635272,29635536-29635916
Length = 268
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 321 KR*S*GSAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANRHP 455
KR S ++ +SS GA P+G R+R + R R AA+ P
Sbjct: 7 KRRSSSASTSSSSGDGAAVSDRPRGVTRKRRSGGRCPRPAASLRP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.123 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,065
Number of Sequences: 37544
Number of extensions: 247361
Number of successful extensions: 992
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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