Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F05
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    26   4.5  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   5.9  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC8C9.20 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.8  

>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 305 TKFHPSPQFDKKIKTYMKD*D 243
           T +HP PQ D  I+ Y+ + D
Sbjct: 150 TTYHPHPQLDSMIQEYLSNGD 170


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 490 FEINHIFTVKIKCL 449
           FEIN  +TVK+KCL
Sbjct: 86  FEINSGYTVKVKCL 99


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 155 LARNYFLYFLLVTNKIIQHLINIIRSFWRNLSPS 256
           +  NY LY L  T   ++   N+ R+FW N  PS
Sbjct: 188 MVENYNLYGLAETIHGLRLGNNLTRTFWANDEPS 221


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 272 FCQTAGWGGI----LCGSQHKKMYYTITIKNKYRIL 367
           F QT G G      L  S H ++YY I +  K +I+
Sbjct: 203 FLQTLGTGSFGRVHLVQSNHNRLYYAIKVLEKKKIV 238


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 167 YFLYFLLVTNKIIQHLINIIRSFWRNLSP 253
           Y L FL     I    +NI+  F+R+LSP
Sbjct: 170 YVLNFLPYLTLIRDTRVNILEQFYRSLSP 198


>SPAC8C9.20 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 438 RGFNKHFILTVKM 476
           RGF KHF+L +KM
Sbjct: 69  RGFRKHFLLLLKM 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,406
Number of Sequences: 5004
Number of extensions: 38363
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)