Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F05
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241...    28   6.0  

>04_04_1488 -
           33922253-33922361,33922459-33922649,33922752-33924130,
           33924205-33924340,33924427-33924502,33924806-33924925,
           33925005-33925082,33925605-33925695,33925805-33925889,
           33925977-33926132,33926317-33926373,33926454-33926552,
           33926702-33926814,33926924-33927014
          Length = 926

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 200 SY*SLIKNIKNNYVPVCTKHT 138
           SY S+I+N+K NY+P  T  T
Sbjct: 426 SYSSIIQNVKQNYIPPLTVST 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,165
Number of Sequences: 37544
Number of extensions: 202154
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)