Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F04
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.17 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.17 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 534 YINLSTLSADSPGELDVFRHNGYAFGVDGAKVGVFKQTH 418
           YIN         GE   + H GY +  DG +V     TH
Sbjct: 371 YINHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNTH 409


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 534 YINLSTLSADSPGELDVFRHNGYAFGVDGAKVGVFKQTH 418
           YIN         GE   + H GY +  DG +V     TH
Sbjct: 319 YINHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNTH 357


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 202 APSTGGVKKPHRYRPGTVALREI 270
           AP+T G+  P    PG +   EI
Sbjct: 265 APATTGIAGPFTQSPGVLGFNEI 287


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 124 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 303
           T+ + R S+G ++PR +   K   K    T   K+P     G    R    + ++  L  
Sbjct: 197 TRYSDRPSSG-RSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAENRYLTE 255

Query: 304 RK 309
           R+
Sbjct: 256 RR 257


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 194  ENRHPVLVELRNPIVIA 244
            E RHP+L  +RN +  A
Sbjct: 1751 EGRHPLLTTIRNVLADA 1767


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 131 CFVRAIIHFSELLKSINYIKLY*NWIYNKF 42
           C   AI  F  LL   +Y+K+Y    Y KF
Sbjct: 8   CVGSAIAGFLFLLICDSYLKIYHKEKYRKF 37


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 473 LCLKTSSSPGESAESVL 523
           LC+  +S  GES E+VL
Sbjct: 306 LCVVNNSVGGESVETVL 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,901
Number of Sequences: 336
Number of extensions: 2786
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)