Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F03
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.37 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.9  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 254 RPEPRYRTSRTPYWTARTAS-CCPVRRLKGTI 346
           +P PR + S  P WT +  +  C  R +KG I
Sbjct: 43  QPYPRQKKSHPPQWTWQCINQRCERRHIKGAI 74


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 210 YHRLTDPVAACNHSLLRQEHLL 145
           Y  LT  +AA NH L   +HLL
Sbjct: 215 YSSLTHSLAASNHLLSSGQHLL 236


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 274 DVANAILDGADCVMLSGETAKGDYPLECVLTM-ANICKEAEAAIWHRQLFNELVAEVTAP 450
           D     ++  D V +    +KGDYPL    T+  +   +    + +R   ++ V+  T  
Sbjct: 609 DFGEDSINEGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRA--SKRVS--TLS 664

Query: 451 IDPAHSTAIAAVEASTKCLASAIVVITT 534
           ID   ST +     +  CLAS    +TT
Sbjct: 665 IDNVQSTHV----GNYTCLASNSASVTT 688


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 ARCNRVGKPVICATQMLESM 237
           ARCN +    IC +Q+  ++
Sbjct: 458 ARCNEIRPDAICVSQLKNAL 477


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 507 RLRHRGDHHQRQVRPLAQQVPAPVSHHSG 593
           R RH   HH+      A++ PAP    +G
Sbjct: 257 RRRHHLVHHKCGGEEEAERAPAPAVRAAG 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,966
Number of Sequences: 336
Number of extensions: 2549
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)