Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F03
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 204 8e-54
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 38 0.001
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.056
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.17
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 0.91
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.8
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 26 4.8
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.4
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 25 6.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.5
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 8.5
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 204 bits (498), Expect = 8e-54
Identities = 103/170 (60%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
Frame = +1
Query: 94 SDGIMVARGDLGIEIPPEKVFLAQKTMIARCNRVGKPVICATQMLESMVKKPRATRAEIS 273
+DGIMVARGDLGIEIP +VF+AQK MIA+CN GKPV CATQMLESM PR TRAE+S
Sbjct: 264 TDGIMVARGDLGIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESMTYNPRPTRAEVS 323
Query: 274 DVANAILDGADCVMLSGETAKGDYPLECVLTMANICKEAEAAIWHRQLFNELVAEVTAPI 453
DV NA+LDGAD VMLSGET KG YP+E V MA + AEA+I + L+ E+ V P+
Sbjct: 324 DVGNAVLDGADLVMLSGETTKGSYPVEAVTYMAETARVAEASIPYGSLYQEMFGLVRRPL 383
Query: 454 DPA-HSTAIAAVEASTKCLASAIVVITTSGKSXHLLSKYRPRCPIIAVTR 600
+ A +TA+AA+ AS + A AIVV++TSG + L SKYRP PI+ VTR
Sbjct: 384 ECATETTAVAAIGASIESDAKAIVVLSTSGNTARLCSKYRPSIPIVMVTR 433
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +3
Query: 9 GEQRKNIKIISKIENHPGMVNLDEI 83
GE+ KNIKII KIEN G+ N D I
Sbjct: 236 GEEGKNIKIICKIENQQGVNNFDSI 260
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 37.9 bits (84), Expect = 0.001
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Frame = -3
Query: 488 STAAIAVECAGSIGAVTSATSSLKSCLCQMAASASLHIFAIVSTHSSG*SPLAVSPDSMT 309
+TA+ SI A + SS S +S A S S S +AV+ S+T
Sbjct: 992 ATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVA--SVT 1049
Query: 308 QSAPSSMAFA--TSDISARVARGFFT--IDSSICVAHITGLPTLLQRAI-IVFCARNTFS 144
S+ SS+A A T ++ VA T + SSI A +TG PT A+ T S
Sbjct: 1050 GSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTAS 1109
Query: 143 GGISIPRSPRATIIPSDSA 87
I+ S A + SD+A
Sbjct: 1110 STIAAAAS--AATLSSDAA 1126
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.3 bits (70), Expect = 0.056
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = -3
Query: 491 ASTAAIAVECAGSIGAVTSATSSLKSCLCQMAASASLHIFAIVSTHSSG*SPLAVSPDSM 312
+ST + + + V+S++S+ S L ++S+S A S+HSS S S S
Sbjct: 356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP--ASSSSHSSSLSSHKSSSSSK 413
Query: 311 TQSAPSSMAFATSDISAR 258
+ SAP S AF + S+R
Sbjct: 414 SSSAPVSSAFYHNSTSSR 431
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 30.7 bits (66), Expect = 0.17
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Frame = -3
Query: 566 YLLSKWXDLPLVVITTMAEARHFVDASTAAIAVECAGSIGAVTSATSSLKSCLCQMAA-S 390
Y + + D + A+A + +S A+++ ++ A + T+ S + S
Sbjct: 142 YTTAVYGDSATTPAASEAQASSDILSSLASLSSASTDNLAASVTPTTVAASVASSVDTDS 201
Query: 389 ASLHIFAIVSTHSSG*SPL-------AVSPDSMTQSAPSSMAFATSDISA 261
AS I ++V + +S S + A PDS ++S P+S ++A+S SA
Sbjct: 202 ASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSA 251
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -3
Query: 491 ASTAAIAVECAGSIGAVT---SATSSLKSCLCQMAASASLHIFAIVSTHSSG*SPLAVSP 321
A +++++VE + T S +S S + S+S F +STH+S +
Sbjct: 18 ARSSSVSVETGSCVRYTTIYSSGSSEFTSTITPETPSSSSSTFVPISTHTSSATNTTSGQ 77
Query: 320 DSMTQSAPSSMAFATSDI 267
S++ S+ +S +++S I
Sbjct: 78 LSISSSSSTSSEYSSSSI 95
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -3
Query: 461 AGSIGAVTSATSSLKSCLCQMAASASLHIFAIVSTHSSG*SPLAVSPDSMTQSAPSSM 288
+ S A +ATSS +S + ++S ++ + +ST S S AVS S+ QS+ +S+
Sbjct: 342 SSSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSS--AVSSYSVVQSSLASI 397
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 155 NTFSGGISIPRSPRATI-IPSDSAINLIKVHHSWVIFDLGDDLDVFP 18
N + I P S RATI +D +++IKV W LG D D P
Sbjct: 267 NFYQDFIRKPGSDRATIDDAADHILHIIKV-AGWEHVGLGSDFDGIP 312
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 226 LESMVKKPRATRAEISDVANAILDGADC 309
L+ ++K R T I D+A LD A C
Sbjct: 451 LKENIRKQRTTSTAIRDIAIKFLDDAKC 478
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 295 DGADCVMLSGETAKGDYP----LECVLTMANICKEAEAAI 402
+G C + +GE + DYP + C + M N+ + A+
Sbjct: 219 NGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAV 258
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 217 WRISPAYRPCCSVQS*SSAPGTPSLVGSRYQGHH 116
WR++PAY P + S+ P T L+G G H
Sbjct: 2231 WRLAPAYSPSIDEKQ-SNEPNT--LLGETIDGLH 2261
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -3
Query: 491 ASTAAIAVECAGSIGAVTSATSSLKSCLCQMAASASLHIFAIVSTHSSG*SPLAVSPDSM 312
+++++ A + S + +S++SS + +S S + VS+ S+ S S D+
Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200
Query: 311 TQSAPSSMA---FATSDISA 261
T SA S+ F+TS SA
Sbjct: 201 TVSASSNSTISGFSTSTTSA 220
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 396 CLRLLAYIRHSEHAFERIVPFSRLTG 319
CL+ L RHSE+ F+++V L G
Sbjct: 1126 CLKSLEEARHSENNFQKMVRLIDLIG 1151
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -3
Query: 401 MAASASLHIFAIVSTHSSG*SPLAVSPDSMTQSAPSSMAFATSDISARVARGFFTIDSSI 222
+A+S+S + FA++ +SS + SPDS S F T ++ G F + +
Sbjct: 638 LASSSSGNDFAVIDFNSSYSRLIIFSPDS--PKIQSIHIFKTLPVALHYLHGGFVVLDNK 695
Query: 221 CVAHI 207
+ H+
Sbjct: 696 SIIHV 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,086
Number of Sequences: 5004
Number of extensions: 39345
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -