Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F03
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 505 LASAIVVITTSGKSXHLLSKYR 570
           L   ++++T +  S H+LSKY+
Sbjct: 12  LFGVLLLLTNADNSVHILSKYQ 33


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 193 PCCSVQS*SSAPGTPSLVGSRYQGHH 116
           P  S+ S    PGTP +  ++ + HH
Sbjct: 131 PSVSLSSPPREPGTPRINFTKLKRHH 156


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 3   TRGEQRKNIKIISKIENHPGMVNLDEIYRRIRRYN 107
           T  E+ K  KIIS + N+    N +        YN
Sbjct: 304 TERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYN 338


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 3   TRGEQRKNIKIISKIENHPGMVNLDEIYRRIRRYN 107
           T  E+ +  KIIS + N+    N +        YN
Sbjct: 71  TERERSREPKIISSLSNNYNYSNYNNYNNNYNNYN 105


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 15/67 (22%), Positives = 22/67 (32%)
 Frame = -2

Query: 279 DVRYLGSGRAXXXXXXXXXXRGAYHRLTDPVAACNHSLLRQEHLLWWDLDTKVTTSYHYT 100
           DV     GR+             Y R       C H ++  + + + DL   V   YH  
Sbjct: 33  DVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92

Query: 99  VGFGDKS 79
           V    +S
Sbjct: 93  VNVHQRS 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,433
Number of Sequences: 438
Number of extensions: 2707
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)