Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_F02
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   112   5e-26
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    39   7e-04
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.0  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  112 bits (269), Expect = 5e-26
 Identities = 50/76 (65%), Positives = 61/76 (80%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 360 TAKGLFKILEKYRPET 407
           TA  +FK+L KYRPET
Sbjct: 86  TATQVFKLLNKYRPET 101



 Score = 64.9 bits (151), Expect = 9e-12
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +1

Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
           G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGV
Sbjct: 135 GLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGV 175


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
           G N  TK + +  ++ +V+A D +PIE++L LP LC    V
Sbjct: 35  GANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNV 75


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 389
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 620 ILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPS 501
           I+  +AG  + T+S+GS+S A T + A   ST  V  +VPS
Sbjct: 787 IVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 399
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 614 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 516
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 360 TAKGLFKILEKYR 398
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,807
Number of Sequences: 5004
Number of extensions: 42653
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)