Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F02
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 108 4e-24
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 108 4e-24
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 91 5e-19
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 36 0.026
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 35 0.061
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 32 0.32
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 32 0.32
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.75
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 0.75
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.3
03_04_0024 + 16556026-16556588,16556757-16556868 29 2.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 7.0
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 9.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 108 bits (259), Expect = 4e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 360 TAKGLFKILEKYRPE 404
A LFK+L KYRPE
Sbjct: 84 LATNLFKMLLKYRPE 98
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM V
Sbjct: 131 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEV 171
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 108 bits (259), Expect = 4e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 360 TAKGLFKILEKYRPE 404
A LFK+L KYRPE
Sbjct: 68 LATNLFKMLLKYRPE 82
Score = 67.3 bits (157), Expect = 9e-12
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +
Sbjct: 115 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 91.5 bits (217), Expect = 5e-19
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 360 TAKGLFKILEKYRPE 404
++L++ + E
Sbjct: 85 LGCQKERLLKRAQAE 99
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +
Sbjct: 116 GLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 156
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G N TK + + A+ VV+A D +P+E++L LP L V
Sbjct: 36 GANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNV 76
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G N TK + + ++ VV+A D +P+E++L LP L V
Sbjct: 38 GANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNV 78
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G V K + + + L +IA ++ PI+++ +P LC + +
Sbjct: 48 GVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANI 88
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 627
G V K + + L VIA ++ PI+++ +P LC + +
Sbjct: 48 GVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANI 88
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 201 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 368
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 369 GLFKILEK 392
+L+K
Sbjct: 412 AAKDVLQK 419
>03_04_0024 + 16556026-16556588,16556757-16556868
Length = 224
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +3
Query: 471 PPPKRPNTLRAGNQHCYQAC*EEEGTACGHRS*RRPNRTCALPASALP*D 620
PPP RP+ LR EEG R RRP+ C P S P D
Sbjct: 85 PPPWRPSWLRQARVCRGGGGGVEEGRVARRRQSRRPSPCCPPPFSLPPAD 134
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 426
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 224 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 331
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,532
Number of Sequences: 37544
Number of extensions: 303536
Number of successful extensions: 838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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