Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F01
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 55 9e-09
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 29 0.69
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.2
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 2.8
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.9
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 26 4.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 6.4
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 6.4
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 8.5
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 8.5
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 54.8 bits (126), Expect = 9e-09
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +3
Query: 60 EQAAKHPRHYTPLLAAFAQSAKAELALLSKVQEYCYENMSFMRAFSKLVLMLYKTNVISE 239
E AK + PLLA S + ++ + +Q+YC +S R F +L+ Y+ + E
Sbjct: 574 EALAKVMTRWGPLLAKLTFSHEEQVDNVLTLQKYCV-RLSMTRHFLQLLGYFYQLEIAEE 632
Query: 240 EVILKWYREPNSSKGKMMFLDQM--KKFVEWLQNA 338
I +WY +P SS+G++ L K+FV+WL A
Sbjct: 633 NAIQEWYSDPRSSEGELAALRDAGGKQFVDWLNTA 667
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 402 DKARAVPSIILPQGYIQTHRQTDRQEFKPADGAVNLPEPRRTTPSS 539
+ A + +IL + + RQ R+ P + VN+P+P +T PS+
Sbjct: 338 EDANELRRVILDE--VLNFRQKVRRRSHPTNPTVNIPQPAQTVPSN 381
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -1
Query: 602 RRHSLVSLEQITNHYKTIIKNGGWRRAAGF 513
RR S V++E+I ++ +KN G++ AAGF
Sbjct: 933 RRMSEVTMEEILASNESELKNEGYKLAAGF 962
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 584 SLEQITNHYKTIIKNGGWRRAAGFG 510
S + ++N +I NG W+ AG+G
Sbjct: 17 SFQNVSNDIPLVIDNGSWQLRAGWG 41
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 51 LLAEQAAKHPRHYTPLLAAF 110
L+A+Q+ K PR Y P L F
Sbjct: 850 LIAQQSQKDPREYVPFLHEF 869
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 66 AAKHPRHYTPLLAAFAQSAKAELALLSKVQEYCYENMSFMRAFSKLVLMLYK-TNVISEE 242
+ K+P+ LL A EL++L++ Q EN+ R + V L K V S +
Sbjct: 326 SVKNPKFSQKLLEEITNIAPTELSVLNEEQAMHLENVFLYRHYRVCVGFLNKQIYVFSSD 385
Query: 243 VILKWY 260
LK Y
Sbjct: 386 EPLKSY 391
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 485 FEFLSVCLSVCLYVSLW*YY*WD 417
F FLS+ LSVCL LW Y WD
Sbjct: 251 FTFLSIGLSVCL--ELW--YLWD 269
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 269 RLAVPLEDHLLGDHVGLVQHQH*FAEGAHEAH 174
R + + DH G +G QH H +GAH H
Sbjct: 167 RFGMEIGDHH-GPTLGAKQHSHSHEDGAHGVH 197
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 507 LPEPRRTTPSSIFNNCL 557
LP PR ++PSS F C+
Sbjct: 14 LPSPRTSSPSSNFKTCV 30
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 225 NVISEEVILKWYREPNSSKGKMMF 296
N S EV+ WYR P+ G ++
Sbjct: 156 NTFSNEVVTLWYRAPDVLLGSRVY 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,632
Number of Sequences: 5004
Number of extensions: 33066
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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