Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_F01
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 81 9e-16
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 61 8e-10
09_02_0462 + 9583558-9584910 41 9e-04
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 30 1.6
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 5.0
07_03_1569 - 27792739-27794175 27 8.7
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888... 27 8.7
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 27 8.7
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 27 8.7
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 27 8.7
01_05_0362 - 21388520-21389827 27 8.7
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 80.6 bits (190), Expect = 9e-16
Identities = 35/104 (33%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +3
Query: 30 EWN-KKEELLAEQAAKHPRHYTPLLAAFAQSAKAELALLSKVQEYCYENMSFMRAFSKLV 206
+W+ K ++ + A + + + LL AF S + EL L+ KVQ CYE+ M+ F +++
Sbjct: 369 QWSGKNQQQNSNSALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLFPEII 428
Query: 207 LMLYKTNVISEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 338
LY +V++E+ IL W+R+ ++ KG+ F+ ++ FV+WL+ A
Sbjct: 429 RTLYDQDVLAEDTILLWFRKGSNPKGRQSFVKALEPFVKWLEEA 472
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +3
Query: 96 LLAAFAQSAKAELALLSKVQEYCYENMS-FMRAFSKLVLMLYKTNVISEEVILKWYRE-P 269
LL + +S E+ +L K +E C EN F FSK++ LY V+SE+ IL+W E
Sbjct: 666 LLRNYTKSVDEEMEILLKFEEMCQENTKEFSPLFSKILPYLYDKEVVSEDAILRWAEEKE 725
Query: 270 NSSKGKMMFLDQMKKFVEWLQNA 338
N+ + +F+ Q + F++WL+ A
Sbjct: 726 NADESDKVFVKQSEAFIQWLKEA 748
>09_02_0462 + 9583558-9584910
Length = 450
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 213 LYKTNVISEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 338
LY +V+ EEVI +WY E + + + K FVEWLQ+A
Sbjct: 402 LYDGDVLDEEVITQWYNESVAGGKESQVVKNAKPFVEWLQSA 443
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 165 YENMSFMRAFSKLVLMLYKTNVISEEVILKWYREPNSSKGKMMFLDQMKKFVE 323
+ +S ++AFS + +L+ + V S I K+ + SS KM+ D++K+ +E
Sbjct: 808 HARLSALQAFSVCICLLHCSEVSSAIGIEKFKHKLYSSSLKMLLKDEVKQLIE 860
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 96 LLAAFAQSAKAELALLSKVQEYCYENMSFMRAFSKLVLMLYKTNVISEEVILKWYREPNS 275
L A A+S++ + LLS V +YC + F +F + + KT +S+ ++K E N
Sbjct: 169 LNADVAKSSRLKPELLSTVFKYCLDKPYFSTSFCEAL----KTVHVSDMFLVKLSNELNL 224
Query: 276 SKGK 287
S G+
Sbjct: 225 SAGE 228
>07_03_1569 - 27792739-27794175
Length = 478
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 60 EQAAKHPRHYTPLLAAFAQSAKAELALLSKVQEYCYENM 176
+ ++ P H PLL AF A+ LA L + C+ +
Sbjct: 87 DPSSPFPGHMMPLLEAFCDGARTPLAALLRELSACHRRV 125
>06_03_1512 -
30688098-30688133,30688401-30688537,30688744-30688834,
30689265-30690815
Length = 604
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +3
Query: 180 FMRAFSKLVLMLYKTNVISEEVILKW--------YREPNSSKGKMMFLDQMKKFVE 323
++ A K ML K+N + E + +W Y ++K KM L+Q K E
Sbjct: 527 YLAAIDKFDAMLSKSNTYAPEALYRWGIALQQRSYLRSGNNKEKMRLLEQAKSMFE 582
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 279 WRSSARGTT*GSPPRR 232
W ARG+T GSPPRR
Sbjct: 36 WLPRARGSTVGSPPRR 51
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 581 LEQITNHYKTIIKNGGWRRAAGFG*INSAVR 489
L+QIT +Y TII GG+ + G IN VR
Sbjct: 476 LDQITKNYSTIIGKGGFGKVY-MGTINGNVR 505
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 602 RRHSLVSLEQITNHYKTIIKNGGW 531
RR + L ITN++++II NGG+
Sbjct: 565 RRFTYTELRTITNNFQSIIGNGGF 588
>01_05_0362 - 21388520-21389827
Length = 435
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Frame = +3
Query: 30 EWNKKEELLAEQAAKHPRH---YTPLLAAFAQSAKAE-LALLSKVQEYCYENMSFMRAFS 197
+W +LL+ Q P H PL++ + SA E + L CY +
Sbjct: 67 KWRYLHDLLSPQGPPEPNHRVPLPPLVSGLSASALVEKMRSLEAEARACYSEQPVDLSSD 126
Query: 198 KLVLMLYKTNVISEEVILKWYR 263
V ML E KW R
Sbjct: 127 DFVQMLLLDGCFILEFFRKWRR 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,126
Number of Sequences: 37544
Number of extensions: 248979
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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