Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_E24
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 101 3e-23
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 101 3e-23
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.30
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 1.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 2.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.7
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 3.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 4.9
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 4.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 6.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 6.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 6.4
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 6.4
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 6.4
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 24 8.5
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 24 8.5
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 101 bits (243), Expect = 3e-23
Identities = 48/68 (70%), Positives = 55/68 (80%)
Frame = +3
Query: 9 RNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDML 188
RNKIAG+TTHLM+R+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDML
Sbjct: 47 RNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDML 106
Query: 189 KMLDFSNI 212
K L + +I
Sbjct: 107 KALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 101 bits (242), Expect = 3e-23
Identities = 51/86 (59%), Positives = 62/86 (72%)
Frame = +3
Query: 9 RNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDML 188
RNKIAG+TTHLM+R+ VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDML
Sbjct: 47 RNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDML 106
Query: 189 KMLDFSNINGLQLTQPATQGGYGGRR 266
K L + I +++ PA Q + R+
Sbjct: 107 KSLGYDQI-PVRVLAPAPQERFRRRQ 131
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.30
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +3
Query: 93 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 227
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 60 SQVRGISIKLQEEERERRDNYVPEV 134
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 45 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 137
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 2.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 284 YNISLITSATVASLCSRLR*LQTINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTP 108
+N ++ + RL T +V+H L+ +L + I+ + +YF I TP
Sbjct: 439 FNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETP 498
Query: 107 FTLLFLKLNRDSSHLGVYETSHQ 39
+L + +DS+ L YE+S Q
Sbjct: 499 VRILSCRCVKDSTLLPPYESSSQ 521
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 150 PVLEQILLGHNCHAF 106
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 3.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +3
Query: 54 IHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQ 233
IH+Q + +L EE + P +S + VDS + + DF + L L+
Sbjct: 463 IHAQPNAVYCRLMEEVGMTSKSISPSLSGISAPSASVDSSASRLAR--DFGS---LSLSS 517
Query: 234 PATQGGYGG 260
+ G GG
Sbjct: 518 NSLLGSLGG 526
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 84 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 215
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 116 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 24
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 6.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 15 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 125
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +3
Query: 60 SQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPA 239
SQ+R +++ ++ + ++ D YV + I + +S + ++LD+ NG ++ A
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVIACA 818
Query: 240 TQ 245
++
Sbjct: 819 SK 820
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 51 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 215
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 30 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 182
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 78 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 179
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 42 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEV 164
+ +L+H Q+ ++ + + E R+++ EV L I+E+
Sbjct: 169 LEQLVHEQLNKLNTESKMEFENRKNDTKNEVQQLSARIVEL 209
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 8.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 9 RNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDT 176
R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 373 REQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNER 432
Query: 177 KDMLKMLDFSNI 212
K L S++
Sbjct: 433 YKRKKGLKDSDV 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,271
Number of Sequences: 5004
Number of extensions: 19968
Number of successful extensions: 79
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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